Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8759g00003 ATGACTCCAGTTAATTTGGCAGGCCAGTTTGGTGACACCACATACACTAAGGTCTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACCATGAAGAAGTATTTTGAGCAGTTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCTACTGGAAGATCTAAAGGCTATGGATTTGTTACATTTCGCGAACCAGAAGCTGCCATGAGAGCTTGTGTAGATGCTGCTCCCGTAATCGACGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGGAGGAGGGAGGAACTTCAGAGTGATGGGTTCTTTCCAGACAGGATTTGGAGGAGGAGTTGGATCAGCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCTATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGTGTGTATGGAGGAGCAACAGCACAGTACCCAGTTTATGGAAGTGGGCCAGGAGGGATGATGACGGGTGCTGCAGCTTTCTACCCGTATCTGCAGTACGGCGGAGAAGGGAGTGGCGGCGGTGGCACAAGCGGGGGCTATAGTTCCGGGCAGGGTTACGGTGTGAACTATGCCCCTCACCTCTTTCAGTATTCTCCGATTGCTTCCACTGCAGCAGGTGCCTATGCCCAGCACTATGGAACACCCATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGTGTGTTTCGCTGTGCCGCAGGCGTGA 807 0.5118 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSGQGYGVNYAPHLFQYSPIASTAAGAYAQHYGTPMSLAPSPALQSVCFAVPQA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8759g00003 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Vium8759g00003 268 SMART rrm1_1 17 89 IPR000504 GO:0003723
Vium8759g00003 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Vium8759g00003 268 Gene3D - 7 113 IPR012677 -
Vium8759g00003 268 PANTHER BOULE-RELATED 6 240 - -
Vium8759g00003 268 SUPERFAMILY RNA-binding domain, RBD 12 116 IPR035979 GO:0003676
Vium8759g00003 268 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Vium8759g00003 268 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8759g00003 Vium-Chr8759 15154 19954 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8759g00003 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 6.27e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8759g00003 - - gmx:100779046 438.343