Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8759g00002 ATGACTCCAGTTAATTTGGCAGGCCAGTTTGGTGACACCACATACACTAAGGTCTTTGTTGGAGGCTTGGCCTGGGAGACTCAAAAGGAGACCATGAAGAAGTATTTTGAGCAGTTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCTACTGGAAGATCTAAAGGCTATGGATTTGTTACATTTCGCGAACCAGAAGCTGCCATGAGAGCTTGTGTAGATGCTGCTCCCGTAATCGACGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCATGGAGGAGGAGGAGGGAGGAACTTCAGAGTGATGGGTTCTTTCCAGACAGGATTTGGAGGAGGAGTTGGATCAGCTTTTCCTTCAGCAGCAACCTTCCCTCATTATGCTATCCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGTGTGTATGGAGGAGCAACAGCACAGTACCCAGTTTATGGAAGTGGGCCAGGAGGGATGATGACGGGTGCTGCAGCTTTCTACCCGTATCTGCAGTACGGCGGAGAAGGGAGTGGCGGCGGTGGCACAAGCGGGGGCTATAGTTCCGGGCAGGGTTACGGTGTGAACTATGCCCCTCACCTCTTTCAGTATTCTCCGATTGCTTCCACTGCAGCAGGTGCCTATGCCCAGCACTATGGAACACCCATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGGCGTGACCGTGTCTCTTCAAGCTCCAATTCCTCATCGCTAG 822 0.5097 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGGGGRNFRVMGSFQTGFGGGVGSAFPSAATFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGATAQYPVYGSGPGGMMTGAAAFYPYLQYGGEGSGGGGTSGGYSSGQGYGVNYAPHLFQYSPIASTAAGAYAQHYGTPMSLAPSPALQSGVTVSLQAPIPHR 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8759g00002 273 SMART rrm1_1 17 89 IPR000504 GO:0003723
Vium8759g00002 273 Gene3D - 7 113 IPR012677 -
Vium8759g00002 273 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 10 97 - -
Vium8759g00002 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
Vium8759g00002 273 PANTHER BOULE-RELATED 6 249 - -
Vium8759g00002 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Vium8759g00002 273 SUPERFAMILY RNA-binding domain, RBD 12 116 IPR035979 GO:0003676
Vium8759g00002 273 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8759g00002 Vium-Chr8759 15153 19954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8759g00002 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 6.56e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8759g00002 - - aip:107629746 433.721