Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium874g00002 ATGATCGAAAACTTCATTGACGACATTGATTGCGGCAGCTTCTTCGACCACATAGATGACCTCCTCGAATTCCCTGCTGAAGAAACATCAGCTGTCACTGACACTACTGTTGTTACACCGGTTGCTCCTCCTCCGACAAACTTCTGGTCCACAGAATCTGACTCGCTGCATGCCACCAATACGGTGTTTTCCGGCAATACTGTGCCGGACCTCTCGACAGAACTCTCTGTTCCGTTTGAAGACATTGAACAATTGGAATGGCTGTCAAATTTTGTTGAGGACTCTTTCTCTGGTGGGAGTCTCACCATGCAGCAAGAGCAGCCACAATGCAGCAACAAGGAGGAGAGAACTCATGCTCAATTCCAGACAGCAAGTCCAGTCTCTGTCCTTGAAAGCAGCACTTTTTACTCTGGAATGAAGGCTGCCTCTCGTAACGCAGAGATTTACATCCCTGTACCATGTGGACGTGCACGCAGCAAGCGTCCACGTCCTGCAGCCTTCAATCCCTATCCAGTCATGCAGCTCATCTCGCCAGCGTCTTCCACCGGCGAGAACACACAGCCCATCACTACCACCTCCAAAACCTCCTCAGACTCTGAGAATTTTGCTGAGTCCACCATCAAGCCACCAAAACAGGCTTCTGGTGAGCACAAGAAGAAAAAGAAGATCAAAGTGACTTTCTCAGGTGGTGAAGACCACAATGCTGCAGCATCACAGGCAGTGAGAAAATGTGTCCACTGTGAGATAACCAAGACACCACAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCTTGTGGCGTGCGCTACAAGTCAGGGCGCCTCTTCCCCGAATACCGGCCGGCTGCCAGTCCGACGTTCTGTGCAGCTGTGCACTCCAACTCCCACAAGAAGGTCCTTGAAATGAGAAACAAGACAGGCCCCAAATCTGGTTTTGCAGCTGATTCAGCTTCCTCACCAGAACTTATTCCAAACACTAACAGCAGCCTTTCCCTGGAATACATGTGA 1017 0.5054 MIENFIDDIDCGSFFDHIDDLLEFPAEETSAVTDTTVVTPVAPPPTNFWSTESDSLHATNTVFSGNTVPDLSTELSVPFEDIEQLEWLSNFVEDSFSGGSLTMQQEQPQCSNKEERTHAQFQTASPVSVLESSTFYSGMKAASRNAEIYIPVPCGRARSKRPRPAAFNPYPVMQLISPASSTGENTQPITTTSKTSSDSENFAESTIKPPKQASGEHKKKKKIKVTFSGGEDHNAAASQAVRKCVHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCAAVHSNSHKKVLEMRNKTGPKSGFAADSASSPELIPNTNSSLSLEYM 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium874g00002 338 Gene3D - 238 288 IPR013088 GO:0006355|GO:0008270
Vium874g00002 338 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 242 301 - -
Vium874g00002 338 Pfam GATA zinc finger 244 277 IPR000679 GO:0006355|GO:0043565
Vium874g00002 338 CDD ZnF_GATA 243 290 IPR000679 GO:0006355|GO:0043565
Vium874g00002 338 PANTHER GATA TRANSCRIPTION FACTOR 15 321 - -
Vium874g00002 338 MobiDBLite consensus disorder prediction 178 208 - -
Vium874g00002 338 FunFam GATA transcription factor 234 319 - -
Vium874g00002 338 ProSiteProfiles GATA-type zinc finger domain profile. 238 274 IPR000679 GO:0006355|GO:0043565
Vium874g00002 338 MobiDBLite consensus disorder prediction 178 222 - -
Vium874g00002 338 PIRSF Txn_fac_GATA_plant 1 332 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vium874g00002 338 ProSitePatterns GATA-type zinc finger domain. 244 269 IPR000679 GO:0006355|GO:0043565
Vium874g00002 338 SMART GATA_3 238 288 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium874g00002 Vium-Chr874 9786 19050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium874g00002 18 308 C2C2-Gata Transcription Factor Family AT4G32890 37.288 1.08e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vium874g00002 GATA 1.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium874g00002 - - gmx:100792644 523.472