Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8748g00004 ATGTGCGAAGCGCTGAAGACGCAGTACCAGGTAAACGAGGAGATCGGTCGTGGACGGTTCGGAACCATCTTCCGCTGCTTCCACCCTCTCTCCAACGATCCCTACGCCTGCAAGGTCATCGACAAGTCTCTCCTCGCCGATTCCACCGACCGCGAGTGTCTCCAGAACGAACCAAAATTCATGACCCTTCTCTCTCCTCACCCTAACATCCTTCAAATCTTCGATGTCTTCGAGGACGACGATTATCTCTCCATCGTCATGGACCTCTGTCAGCCCCACACGCTCTTCGACCGCATCGTTAACGGCCCAATCTCCGAGACCCAGGCGGCCGTCCTCATCAAGAGCCTTCTCGAAGGCCTGGCCCACTGCCATCGCATGGGCGTGGCCCACCGCGACATCAAGCCCGACAATGTTCTCTTCGACTCCGCGGATAATCTCAAGCTCGCGGACTTCGGGTCGGCGGAGTGGTTCGGCGACGGGAGCACCATGAGTGGCGTGGTGGGGACGCCGTACTACGTGGCACCGGAGGTTGTGATGGGAAGGGAGTATGATGAGAAAGTTGATGTGTGGAGCTGTGGTGTTATTTTGTATATAATGTTGGCAGGGATTCCCCCTTTCTATGGAGACTCTGCTGCCGAGATCTTTGAGGCTGTGGTTAGGGCTAACCTTCGCTTCCCTTCTAGAATCTTCCGGAATGTCTCCCCCGCCGCCAAGGATCTCCTCAGAAAAATGATCTGTCGAGACCCTTCTAGAAGGTTCTCAGCAGAACAAGCCTTGAGACATCCTTGGATCTTGAGTGCTGGTGACACAGCTCAGTTGACTTGA 825 0.5527 MCEALKTQYQVNEEIGRGRFGTIFRCFHPLSNDPYACKVIDKSLLADSTDRECLQNEPKFMTLLSPHPNILQIFDVFEDDDYLSIVMDLCQPHTLFDRIVNGPISETQAAVLIKSLLEGLAHCHRMGVAHRDIKPDNVLFDSADNLKLADFGSAEWFGDGSTMSGVVGTPYYVAPEVVMGREYDEKVDVWSCGVILYIMLAGIPPFYGDSAAEIFEAVVRANLRFPSRIFRNVSPAAKDLLRKMICRDPSRRFSAEQALRHPWILSAGDTAQLT 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8748g00004 274 SUPERFAMILY Protein kinase-like (PK-like) 6 266 IPR011009 -
Vium8748g00004 274 FunFam Phosphoenolpyruvate carboxylase kinase 2 1 274 - -
Vium8748g00004 274 CDD STKc_CAMK 8 263 - -
Vium8748g00004 274 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vium8748g00004 274 ProSiteProfiles Protein kinase domain profile. 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8748g00004 274 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Vium8748g00004 274 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 267 - -
Vium8748g00004 274 Gene3D Transferase(Phosphotransferase) domain 1 93 273 - -
Vium8748g00004 274 SMART serkin_6 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8748g00004 274 Pfam Protein kinase domain 9 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8748g00004 274 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vium8748g00004 274 FunFam Phosphoenolpyruvate carboxylase kinase 1 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8748g00004 Vium-Chr8748 8910 10436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8748g00004 3 271 EF-hand Containing Proteins AT1G61950 41.971 1.71e-72 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vium8748g00004 Pkinase 2.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8748g00004 - K08794 gmx:548089 516.924