Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8745g00009 ATGACTGAGGCCGCCACAACCACGGGTGTCAGCTTGAAGCTTCTCGTCTTGGTGGCTGTTTTGGTCGTCTTCGCGGTGGTGATTCTGGTTCTCGTCTTCTTCCTGTGCTTGCGGGGCGGCCGGAGCTGGAAGCGGCGGAAGTTGGCGGCGAAACTCAGCTCCGGGAGCATCCCTCTGGTGTCGAAGGAGATCATGGTGGTTAAGACCTCGGATCTCACCCCTGCGACGACGAGCGAGATTGGTGACGTGGAGGGTGATCCGAAGAAGGAGGCGGGCATGAAGGTCGAGATTGAAGCGGTGACAGCAGTGACGAAGAGCGAAGTTTCCGGTGGTGGGGCCCACCGCAGCGAGTTGTCGGTGGAGGATCCGAACATAGGGTGGGGTCGGTGGTACAGCATGAAGGAAGTGGAACTCGCCACGCGCGGTTTCGCAGAAGGGAATGTTATTGGGGAAGGTGGGTACGGTGTTGTGTACAGAGGAATTCTGCACGATGCTTCCGTCGTTGCTGTCAAGAATCTTCTAAACAACAAGGGTCAAGCAGAGAAGGAGTTTAAGGTAGAGGTTGAAGCTATTGGGAAAGTAAGGCATAAGAATTTGGTTCGTTTGGTGGGATATTGCGCTGAAGGTGCTCGAAGGATGCTTGTTTATGAGTATGTTGACAACGGAAACTTAGAACAGTGGCTGCATGGTGATGTAGGACCAGTTAGCCCCTTGACATGGGAGATTCGAATGAGAATTGCTATTGGGACAGCAAAAGGGCTAGCCTATTTGCATGAAGGCTTAGAACCCAAAGTTGTGCACCGGGATATAAAATCCAGTAACATTCTGTTGGATAAAAACTGGAATGCCAAAGTATCAGATTTTGGACTTGCCAAACTCTTAGGATCTGAGAAAACCCATGTGACGACGCGTGTAATGGGAACATTCGGATATGTTGCACCTGAGTATGCAAGCTCAGGTATGCTTAATGAGCGCAGTGATGTGTATAGCTTTGGAGTTCTACTCATGGAGATAATCACAGGAAGAAGCCCCATTGATTATTCAAGACCACCTGGAGAGATGAATCTAGTAGATTGGTTCAAGGCAATGGTAGCAAGCCGTCGCAGTGAGGAGCTAGTTGATCCGTTGGTTGAGATTCCACCCTCTCCAAGATCTTTGAAACGAGTTTTACTGATTTGTCTGCGGTGTATAGACTTGGATGTCGTTAAACGACCAAAGATGGGTCAAATTGTTCATATGCTTGAGACAGATGATTTCCCCTTTCGTTCTGAGCTACGCACAGTTAGAGAGAAAGATCCTTTGCCTTCTCACGCTGATGTTTCCATTAAAGTTCCTTATCCACCACCAAAGCATGCAGAAACCGTAGAAAAATCAAGATGGAGATGA 1386 0.4899 MTEAATTTGVSLKLLVLVAVLVVFAVVILVLVFFLCLRGGRSWKRRKLAAKLSSGSIPLVSKEIMVVKTSDLTPATTSEIGDVEGDPKKEAGMKVEIEAVTAVTKSEVSGGGAHRSELSVEDPNIGWGRWYSMKEVELATRGFAEGNVIGEGGYGVVYRGILHDASVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVRLVGYCAEGARRMLVYEYVDNGNLEQWLHGDVGPVSPLTWEIRMRIAIGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKNWNAKVSDFGLAKLLGSEKTHVTTRVMGTFGYVAPEYASSGMLNERSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKAMVASRRSEELVDPLVEIPPSPRSLKRVLLICLRCIDLDVVKRPKMGQIVHMLETDDFPFRSELRTVREKDPLPSHADVSIKVPYPPPKHAETVEKSRWR 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8745g00009 461 CDD STKc_IRAK 149 415 - -
Vium8745g00009 461 SMART serkin_6 143 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8745g00009 461 FunFam Putative receptor-like serine/threonine-protein kinase 219 429 - -
Vium8745g00009 461 ProSiteProfiles Protein kinase domain profile. 143 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8745g00009 461 MobiDBLite consensus disorder prediction 436 461 - -
Vium8745g00009 461 Gene3D Transferase(Phosphotransferase) domain 1 219 425 - -
Vium8745g00009 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Vium8745g00009 461 ProSitePatterns Protein kinases ATP-binding region signature. 149 171 IPR017441 GO:0005524
Vium8745g00009 461 PANTHER OS01G0323000 PROTEIN 6 431 - -
Vium8745g00009 461 Gene3D Phosphorylase Kinase; domain 1 115 218 - -
Vium8745g00009 461 Pfam Protein tyrosine and serine/threonine kinase 146 414 IPR001245 GO:0004672|GO:0006468
Vium8745g00009 461 FunFam Probable serine/threonine-protein kinase At1g01540 123 218 - -
Vium8745g00009 461 SUPERFAMILY Protein kinase-like (PK-like) 121 416 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8745g00009 Vium-Chr8745 39894 43796 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8745g00009 4 417 Trihelix Transcription Factor Family AT1G70460 41.905 2.09e-96 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vium8745g00009 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8745g00009 - - gmx:100305442 766.533