Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8745g00002 ATGTTTGTTTCTTGTCAAAAATACAACCCCTACTTTCCCTGTTCCTCGTTTCCACTGCACAACCCAACAACAACATGCACCATTTTCAATTGCCAAAACCCAAAGGAGCATCACTCCATTCTCCGGAAGCACAATTCCAAATCCACTGCCTATCTCCTTCAGCATCTCGCTCTCAAAGATGGGGTACCCATTTCCACTTCCATTCCCAAACCCAGCGAGCTTCTAGACCCAATGCCCCACGATGAGAAAGTGAAGGTTTTGGAGCTTTCCCTCGTCAGAAAAAGGACCCCTCAGTTTCCCGGTTCCATCTACGCTCAATCTCCCGGCGACCCTGATGTGGGTTCTTCTCTGCCCCCTATCCGCACTCTCTTTCAATCAGGTGTGGACTTTGATGATAAAGATGAGAAGGAAGAGGAGGAGGAGGAGATGATTATGCGCGCTCTCGAGATTCGAAGAAAGGTCACCGAAGAGGTTTTCAAAGAAGCCATGCGGAAGGGAAAGTTTGGAATCACCTACTCTACTAATTTGATTGGCAGGTTATCCGGTTTTCTGGATCATATCATGATTGAAGCTGCTAACTTGAAAAGATTGCCCGGGTTTTCAAACTCCTCCTTCAATTTACGCGCCAAAACTGTTATTGACGACTCTAAAGTTGTGCCACTTATTAGATGGTTGAAGCACAATGCACTGTCATATCCTCGGATAGCGAAGGTCATTTTGATGTCAAGAGGAAAACCTGAGGCCATAAGAAGTTTTGTCATGTGGTTGAAATCGGTACGTGTGAAAGGTGAGTTTCTCGGTGTTGTAATGTTGAAGGCCGGAGATAATATTTTGCAGCGCAGACATGAGGAGCTGGATGAGATTGTTCAATATTTGGAGTCCAATGGAGTTAGGAGGGATTGGATAGGTTATGTCATTAGTCGTTGTCCTCAGTTATTGTCTTACAGCTTAGAAGAAGTGAAGATTCGTGCTCATTTCTTCCTAGATATGGGTTTAAATGAGAAGGATTTTGGGACAATGGTTTTTGATTTTCCTAAAGTTCTTGGTTACTATTCTCTGGAAGAAATGAATGAAAAGGTTAATTACTTAAAAGAATTTGGGCTTCAACTTGAGGATGTGGGCAAATTGCTTGCATTTAGGCCACAATTGATGGCGTGTAGTATCGAGGAACATTGGAAGCCTCTTGTAAAGTATCTGTATTATTATGGGATCACTCGAGATGGCATGAAGAGGATGCTTATCATTAAACCAATGGTGTTTTGTGCTAACTTGGAGAAGACTATTGTTCCAAAGGTAAATTTTTTTGAGGACATAGGGGTTCACAATGAAGGGATTGGCAGCATGCTTGTGAAGTTTCCACCTCTACTCACTTACAGCCTGCACAAGAAAATTAGACCAGTGGTTATATTCTTGATGACCAAAGCTGGAGTCACAGAGAAAGATATTGGCAAGGTTATGGCTCTTGGACCTGAGCTCTTGGGATGCAATATAGTACATAAGCTTGATGTGAATGTAAAATATTTTTTATCTCTTGGCATACGTCTTCGGCAATTGGGTGAGATGATTGCTGATTTCCCGTTGCTCCTCCGATACAATCCAGATGTCCTTCGTCCCAAGTATATTTATCTGCGAAAATCCATGGTCAGGCCTTTGGAAGATGTCATTGAGTTTCCAAGGTTTTTCAGTTATTCTCTTGAGGGTCGAATTATCCCAAGGCACAAGGTTCTAGTGGAGAACCATATTAATATTAAGCTGAGATATATGTTGGCTAGCACTGACGAAGAATTCCACAAAATGGTTAAGGACTTGATTGGAAAGCGCAGAAGATTTGAATCTGCTGTCACAAATGAGGGTACTACCCATCCCCAATCTGTTATCACTGAAGATATTTCTACACCTCAGGCATAA 1908 0.424 MFVSCQKYNPYFPCSSFPLHNPTTTCTIFNCQNPKEHHSILRKHNSKSTAYLLQHLALKDGVPISTSIPKPSELLDPMPHDEKVKVLELSLVRKRTPQFPGSIYAQSPGDPDVGSSLPPIRTLFQSGVDFDDKDEKEEEEEEMIMRALEIRRKVTEEVFKEAMRKGKFGITYSTNLIGRLSGFLDHIMIEAANLKRLPGFSNSSFNLRAKTVIDDSKVVPLIRWLKHNALSYPRIAKVILMSRGKPEAIRSFVMWLKSVRVKGEFLGVVMLKAGDNILQRRHEELDEIVQYLESNGVRRDWIGYVISRCPQLLSYSLEEVKIRAHFFLDMGLNEKDFGTMVFDFPKVLGYYSLEEMNEKVNYLKEFGLQLEDVGKLLAFRPQLMACSIEEHWKPLVKYLYYYGITRDGMKRMLIIKPMVFCANLEKTIVPKVNFFEDIGVHNEGIGSMLVKFPPLLTYSLHKKIRPVVIFLMTKAGVTEKDIGKVMALGPELLGCNIVHKLDVNVKYFLSLGIRLRQLGEMIADFPLLLRYNPDVLRPKYIYLRKSMVRPLEDVIEFPRFFSYSLEGRIIPRHKVLVENHINIKLRYMLASTDEEFHKMVKDLIGKRRRFESAVTNEGTTHPQSVITEDISTPQA 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8745g00002 635 Gene3D Transcription termination factor 3, mitochondrial 378 603 IPR038538 -
Vium8745g00002 635 SMART mt_12 303 333 IPR003690 GO:0003690|GO:0006355
Vium8745g00002 635 SMART mt_12 374 405 IPR003690 GO:0003690|GO:0006355
Vium8745g00002 635 SMART mt_12 410 441 IPR003690 GO:0003690|GO:0006355
Vium8745g00002 635 SMART mt_12 338 369 IPR003690 GO:0003690|GO:0006355
Vium8745g00002 635 SMART mt_12 551 582 IPR003690 GO:0003690|GO:0006355
Vium8745g00002 635 SMART mt_12 446 478 IPR003690 GO:0003690|GO:0006355
Vium8745g00002 635 SMART mt_12 483 514 IPR003690 GO:0003690|GO:0006355
Vium8745g00002 635 SMART mt_12 519 550 IPR003690 GO:0003690|GO:0006355
Vium8745g00002 635 MobiDBLite consensus disorder prediction 614 635 - -
Vium8745g00002 635 Pfam mTERF 355 596 IPR003690 GO:0003690|GO:0006355
Vium8745g00002 635 Pfam mTERF 234 365 IPR003690 GO:0003690|GO:0006355
Vium8745g00002 635 PANTHER CGI-12 PROTEIN-RELATED 277 369 IPR003690 GO:0003690|GO:0006355
Vium8745g00002 635 MobiDBLite consensus disorder prediction 615 635 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium8745g00002 mTERF 7.7e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8745g00002 K15031 - qsa:O6P43_001902 846.654