Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8745g00001 ATGGCTGCAGCTGATGTTGAGTTCAGATGTTTCATCGGTGGCCTAGCATGGGCCACCGACAGTGATTCCTTGGAGAAAGCCTTCTCTGTATACGGCGAAGTCCTTGAATCGAAGATTATCAATGATCGTGAGACTGGAAGGTCTAGGGGTTTCGGATTCGTGACTTTTTCTTCGGAGCAGGCCATGAGAGACGCGATCCAAGGAATGAACGGTCAGAATCTTGACGGTCGTAACATCACAGTGAATGAAGCTCAGTCTCGTGGTTCTGGCGGAGGAGGCGGTGGCCGTGGAGGTGGCGGATATGGCGGCGGTGGTGGATACAATCGTGGTGGAGGAGGTGGTTACGGTGGTGGTGGCGGCTACGGTGGCGGTGGCGGCGGTGGATATGGTGGCCGGCGTGAAGGAGGGTACAGCCGTAATAGCGGTGGTTATGGTGGAGGAGGTGGTTATGGCGGTGGTAGAGATCGTAGTTATGGTGATGGTGGATCCCGCTCTCGTGGCGGTGATGGAGGAGACGGTAGCTGGAACTAG 531 0.5593 MAAADVEFRCFIGGLAWATDSDSLEKAFSVYGEVLESKIINDRETGRSRGFGFVTFSSEQAMRDAIQGMNGQNLDGRNITVNEAQSRGSGGGGGGRGGGGYGGGGGYNRGGGGGYGGGGGYGGGGGGGYGGRREGGYSRNSGGYGGGGGYGGGRDRSYGDGGSRSRGGDGGDGSWN 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8745g00001 176 Gene3D - 3 113 IPR012677 -
Vium8745g00001 176 MobiDBLite consensus disorder prediction 70 87 - -
Vium8745g00001 176 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Vium8745g00001 176 SUPERFAMILY RNA-binding domain, RBD 8 141 IPR035979 GO:0003676
Vium8745g00001 176 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Vium8745g00001 176 SMART rrm1_1 9 82 IPR000504 GO:0003723
Vium8745g00001 176 PANTHER GEO13361P1-RELATED 4 161 - -
Vium8745g00001 176 MobiDBLite consensus disorder prediction 70 176 - -
Vium8745g00001 176 CDD RRM2_NsCP33_like 9 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8745g00001 Vium-Chr8745 1879 2897 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8745g00001 2 88 Eukaryotic Initiation Factors Gene Family AT2G23350 30.682 4.51e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8745g00001 - K13195 ccaj:109800369 161.77