Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8743g00002 ATGGCAATCATGATATTTTCAATCAGGATTAGCCAATATTTCATGCGCAGAACACCATCATCTTCAGAATGTAGGCCTTTGAGTGGACTTGAACCCACAACACTTGCTGAATTGGCTTTGAAGGATGCTGAGAAGCTTGTTGAACTCCAAAGTAATGCAGCAAAACCATATCTTTTAAAGGCCAATGCTCTTCTCCTGTTAGAGAAATACGAAAAGGCCCGGGATGTTATTCTTTCAGGCCTTCAAGTTGATCCTTTTAGTAAATCTCTTCGGGAATCTCTTCAAAATTTAGAAAGAGTTTCATCTAGTTCAACAGGGATGAGTACACATGGACAGCCTGAGCGTAATGATGATTTTGATTGCACTCTCTGCCTGAAGTTATTGTACGAACCTGTCACAACCCCTTGTGGACATTCTTTTTGTCGTTCATGTCTATTTCAGTCAATGGATCGTGGAAACAGATGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCCAGAACATGTTCCATCAGTGTGACACTGAAGAACATCATACAAAAGAACTTTCCTGAGGAATATGCTGAAAGGAAGCAAGAGCAGGATGGCTTAACCAACACTGGTGTTGATTTACTCCCCCTTTTTGTCATGGATGTTGTCATACCATGTCAAAGGTTTCCGCTCAATATATTTGAACCTCGATATAGACTCATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGCTATACTTGATTCTTCATCAGGTTCTTTAGCCGAGTTTGCCTGTGAAGTGGAAATCACCGAGTGTGAACCACTTCCAGATGGTCGTTTTTATATAGAGATTGAAAGTCGTAGGAGATTTCGAATCATCCGATCATGGGATCAAGATGGGTATCGGGTTGCAGAGGTTGAGTGGATACAGGATATTTTGCCACCAGAAGGAACTAGTGAAAGAGATACTTTACTGGAATTGACATGTAATGCAGCCGAAAGTGCTCGATCATGGATAGCAAGAGCTAAAGAAGCAGCAGGACATGATCAAAGAAAACTTGAGAGACTCGCCAGTATTGAAGTAATGATGCCCTCATTAAAAGACCCTGAGCGCTTTAGTTTTTGGCTTTGTACCCTCTCCAATAGGAGGCCTGCGGACAGATTGGATCTCCTACGCATCAGAGATACCACGGAGAGGATTAGACGGGGCCTGATATTTCTCCGACAAGAAGAACAAGGCTGCAGAATTCAGTAA 1236 0.4231 MAIMIFSIRISQYFMRRTPSSSECRPLSGLEPTTLAELALKDAEKLVELQSNAAKPYLLKANALLLLEKYEKARDVILSGLQVDPFSKSLRESLQNLERVSSSSTGMSTHGQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQEQDGLTNTGVDLLPLFVMDVVIPCQRFPLNIFEPRYRLMVRRIMEGNHRMGMAILDSSSGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDILPPEGTSERDTLLELTCNAAESARSWIARAKEAAGHDQRKLERLASIEVMMPSLKDPERFSFWLCTLSNRRPADRLDLLRIRDTTERIRRGLIFLRQEEQGCRIQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8743g00002 411 Gene3D Tetratricopeptide repeat domain 35 108 IPR011990 GO:0005515
Vium8743g00002 411 SUPERFAMILY RING/U-box 116 184 - -
Vium8743g00002 411 CDD RING-HC_LONFs_rpt2 118 162 - -
Vium8743g00002 411 ProSiteProfiles Zinc finger RING-type profile. 121 159 IPR001841 -
Vium8743g00002 411 Pfam Zinc finger, C3HC4 type (RING finger) 121 158 - -
Vium8743g00002 411 ProSitePatterns Zinc finger RING-type signature. 136 145 IPR017907 -
Vium8743g00002 411 SMART ring_2 121 158 IPR001841 -
Vium8743g00002 411 Gene3D - 203 305 IPR046336 -
Vium8743g00002 411 PANTHER RING FINGER PROTEIN 127 32 404 - -
Vium8743g00002 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 201 IPR013083 -
Vium8743g00002 411 SMART lon_5 204 403 IPR003111 -
Vium8743g00002 411 Pfam ATP-dependent protease La (LON) substrate-binding domain 205 402 IPR003111 -
Vium8743g00002 411 SUPERFAMILY TPR-like 37 98 IPR011990 GO:0005515
Vium8743g00002 411 SUPERFAMILY PUA domain-like 205 401 IPR015947 -
Vium8743g00002 411 ProSiteProfiles Lon N-terminal domain profile. 202 403 IPR003111 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8743g00002 Vium-Chr8743 7420 14662 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8743g00002 109 162 C3H Transcription Factor Family AT1G74990 35.088 1.68e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8743g00002 - - gmx:100802277 690.263