Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8743g00001 ATGGCTTCTTCTCTTTCCCCTTCTTCCTCTTCCCTCGACCAAATCCTCCGCGACGTCGACGACTACGTTTTGGAAAATAAATCAGAAGATTTGTCATGGGACACACTACATTACGTGTACGAGCTTGTGCAGAATGGCAATGCTGCGTTTCGAGGGAACAGATTGGAAGAGGCAATCAATTATTACTCAAGAGCCAATAACATCAAATCAGGTGATCCAATCATCCTCAGCAATCGAAGTGCAGCTTATATTAGGATTAGCCAATATTTCATGCGCAGAACACCATCATCTTCAGAATGTAGGCCTTTGAGTGGACTTGAACCCACAACACTTGCTGAATTGGCTTTGAAGGATGCTGAGAAGCTTGTTGAACTCCAAAGTAATGCAGCAAAACCATATCTTTTAAAGGCCAATGCTCTTCTCCTGTTAGAGAAATACGAAAAGGCCCGGGATGTTATTCTTTCAGGCCTTCAAGTTGATCCTTTTAGTAAATCTCTTCGGGAATCTCTTCAAAATTTAGAAAGAGTTTCATCTAGTTCAACAGGGATGAGTACACATGGACAGCCTGAGCGTAATGATGATTTTGATTGCACTCTCTGCCTGAAGTTATTGTACGAACCTGTCACAACCCCTTGTGGACATTCTTTTTGTCGTTCATGTCTATTTCAGTCAATGGATCGTGGAAACAGATGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCCAGAACATGTTCCATCAGTGTGACACTGAAGAACATCATACAAAAGAACTTTCCTGAGGAATATGCTGAAAGGAAGCAAGAGCAGGATGGCTTAACCAACACTGGTGTTGATTTACTCCCCCTTTTTGTCATGGATGTTGTCATACCATGTCAAAGGTTTCCGCTCAATATATTTGAACCTCGATATAGACTCATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGCTATACTTGATTCTTCATCAGGTTCTTTAGCCGAGTTTGCCTGTGAAGTGGAAATCACCGAGTGTGAACCACTTCCAGATGGTCGTTTTTATATAGAGATTGAAAGTCGTAGGAGATTTCGAATCATCCGATCATGGGATCAAGATGGGTATCGGGTTGCAGAGGTTGAGTGGATACAGGATATTTTGCCACCAGAAGGAACTAGTGAAAGAGATACTTTACTGGAATTGACATGTAATGCAGCCGAAAGTGCTCGATCATGGATAGCAAGAGCTAAAGAAGCAGCAGGACATGATCAAAGAAAACTTGAGAGACTCGCCAGTATTGAAGTAATGATGCCCTCATTAAAAGACCCTGAGCGCTTTAGTTTTTGGCTTTGTACCCTCTCCAATAGGAGGCCTGCGGACAGATTGGATCTCCTACGCATCAGAGATACCACGGAGAGGATTAGACGGGGCCTGATATTTCTCCGACAAGAAGAACAAGGCTGCAGAATTCAGTAA 1464 0.4283 MASSLSPSSSSLDQILRDVDDYVLENKSEDLSWDTLHYVYELVQNGNAAFRGNRLEEAINYYSRANNIKSGDPIILSNRSAAYIRISQYFMRRTPSSSECRPLSGLEPTTLAELALKDAEKLVELQSNAAKPYLLKANALLLLEKYEKARDVILSGLQVDPFSKSLRESLQNLERVSSSSTGMSTHGQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQEQDGLTNTGVDLLPLFVMDVVIPCQRFPLNIFEPRYRLMVRRIMEGNHRMGMAILDSSSGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDILPPEGTSERDTLLELTCNAAESARSWIARAKEAAGHDQRKLERLASIEVMMPSLKDPERFSFWLCTLSNRRPADRLDLLRIRDTTERIRRGLIFLRQEEQGCRIQ 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8743g00001 487 Gene3D - 279 381 IPR046336 -
Vium8743g00001 487 SUPERFAMILY RING/U-box 192 260 - -
Vium8743g00001 487 PANTHER RING FINGER PROTEIN 127 23 480 - -
Vium8743g00001 487 SMART ring_2 197 234 IPR001841 -
Vium8743g00001 487 Pfam ATP-dependent protease La (LON) substrate-binding domain 281 478 IPR003111 -
Vium8743g00001 487 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Vium8743g00001 487 ProSiteProfiles Zinc finger RING-type profile. 197 235 IPR001841 -
Vium8743g00001 487 Gene3D Tetratricopeptide repeat domain 28 179 IPR011990 GO:0005515
Vium8743g00001 487 CDD RING-HC_LONFs_rpt2 194 238 - -
Vium8743g00001 487 SMART lon_5 280 479 IPR003111 -
Vium8743g00001 487 SMART tpr_5 130 163 IPR019734 GO:0005515
Vium8743g00001 487 SMART tpr_5 39 72 IPR019734 GO:0005515
Vium8743g00001 487 SUPERFAMILY PUA domain-like 281 477 IPR015947 -
Vium8743g00001 487 SUPERFAMILY TPR-like 38 171 IPR011990 GO:0005515
Vium8743g00001 487 Pfam Zinc finger, C3HC4 type (RING finger) 197 234 - -
Vium8743g00001 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 277 IPR013083 -
Vium8743g00001 487 ProSiteProfiles Lon N-terminal domain profile. 278 479 IPR003111 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8743g00001 Vium-Chr8743 7420 16488 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8743g00001 185 238 C3H Transcription Factor Family AT1G74990 35.088 2.27e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8743g00001 - - gmx:100802277 828.55