Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8742g00002 ATGATTGGAAGTAAAGATCGTGTTGCTGAATCGGAGGGTGAGAACTCTAGGAGCAAGTTTTCAAGGCACTATTTTGGGGCAAACAAGGAGTACCCAGATGAGAAAGGTGTTTTATTTCTGAGAGATTCACAGATGGGTGGTGGTGGTGGTGGTGTTGATGGGGTTCTTCGTCCAAAACCCACCGAGGTTGTTGTTGGAAGCTTGGGGTTCCAAGAGTTGACCCTCAGCTACCTTTGTGACAACCCAAAACTCAGTTTTTCTGAGAAAGAGAATCCTGGTAAAAGCTTGCTGAGTTCCTTTGAGAGAATAAGCCACAAAGGGAAAGAGGTTGTGGTTTGTGAGAACTCAAATCAGGATGGCAAATGGGTGGAAAGAGATTTCCTCAGCTTGAGTGAGCCAAGAGAGGATTCTTCAAAGAGATCCCTTGAGGAAGTTGTTGAGAGGGAGAGTAATAAGGAGAAGAAGCAAAAACTGGAGACCCTCAATCTCTCTCTTGCTTTGCCTGATGTTTCACTTTCCCTCACTGCTTCAAACGCCTTGCAAAATGGTGATCAACTAGTTAGGAATAAACCTTCTAGGCCATCCGCTACTCACACTTCATACTCCAATGACTACACAGCAGCTTCTTTGTCTTACTCCTATTCCCACCCATTCTCTCACAACCCAAGCTGCTCACTTACCCGCAATTCAACCGATAATTTTGAGTACTCGGTGAGCAAAGATGACCAAATTTGGAACTGTGGAGAGGGGACCAATGGGTCTGTTCATAGTAGGTTCAAGCCAATAGGAGATGGCGTTGCTTTGACCAGCCATGGTGCTGGTATTAGTTCCTTTATGCAAGGTAATAGTCAGTATAAAACTACTAGTTCAGATAACCATTCTTTTTTCCCTTCGGAGTTGCCTGCCAGGCCAAGGCTTGAGGCTCAGTCAGGGGACTCAAGGGGTAGGAACTCTGATAACCTGAGAATCTTGGATGGTTTGGATGATGGGAAGGTAAGGAAGCATTCCAGGCCAGAGAGAATTATTAGGGAGATTGTTTCAGAGTCTATCACTGTCATGGCATTGACAATTCAGGAGCTTACCGATGATGTCATAGCATCAAGTAAGGAATACTTAAAGAATCTCATTGAGAAGCCTGACAAGAAAGAGGAACTGGTAAGCCTCCAAAACCGGCTTGATAGAAGATCTGACCTAACAAAGGAGAGTCTTTCAAAGTGCCACAAAGTACAGTTAGAGGTTTTAGTGGCTCTCAAGATGGGGCTTTCTAGCTTCCTTTCTAGCAAAGTTCAGTTGTCTGAGATGGTAGAGATTTTCTTGTATAAGAGATGTAGGAATGTAACCTGCATGAGTTTGCTTCCTGTTGATGATTGTGACTGCAAGATTTGCTCAGGAAATAAGGGCTTTTGTAGTTCTTGCATGTGTCCTGTATGTTTGAACTTTGATTGTGCAAATAGCACTTGTAGTTGGATAGGATGTGATGTTTGTTCTCATTGGTGCCATGCTACCTGTGGCATTCAGAGAAATCTTATCAAGCCTGGACCTAGCTTGAAGGGTCCTTCTGGGACCTCAGAGGTGCAGTTTCATTGTCTCGGATGTGGACATGCCTCGGAAATGTTTGGTTTTGTAAAAGACGTGTTTCTGTATTGTGCAAAGGATTGGGGTCTTGAAACCTTGATGAAAGAGCTTGACTGTGTAAGGAGGATCTTCAGGGCAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTTAAAACTGATGACTTGCTATTAAAGCTTCAAACTAAATTGGTATCTCCTTCGGAAGCTTGCAATTACATCGTACAATTTTTCAACTACGCAGACAGCATGTCAGATTTTCCTGCTTCTGGTGGTATTTCTTCAAAGGATTTGGCAGCCTCTCAAACTAACCTTACAAAGGGTATACCATCTCTTTCAAAACCTAACCCTCTATTACCAAATTATGGTTATGAGATGGGCTATTCTAGGTCACATCCTGATGCCATGTCAAGTGAAGTACTTCAGAAAGACCTCAAAGCTTCCATGTTGAGTGAACTGAAAAATGAGGCTGATTTCCATTTGGGGGCTTTATTAAGAAAAGGTGGACTTGAAAGTTTGGGGAGCATTGTGAGGATAAAGGAGGCAGAAGCCAGAATGTTCCAAACCAAGGCAGATGAAGCAAGAAGAGAGGCAGAAGGGTTCCAGAGGATGATCAGGACGAAGACTGCCCAGATGGAAGAAGAATATGCTGAAAAGCTTTCCAAACTCTGCTTGCACAAGACTGAGGAAACACAGAGGAAGAAAATGGATGAACTCAAAGTCTTGGAAAATTCCTATTTTGATTACTATAAAATGAAAAAGAGAATGCAAGAAGAGATTGATGGTTTGTTGCGGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAG 2421 0.4312 MIGSKDRVAESEGENSRSKFSRHYFGANKEYPDEKGVLFLRDSQMGGGGGGVDGVLRPKPTEVVVGSLGFQELTLSYLCDNPKLSFSEKENPGKSLLSSFERISHKGKEVVVCENSNQDGKWVERDFLSLSEPREDSSKRSLEEVVERESNKEKKQKLETLNLSLALPDVSLSLTASNALQNGDQLVRNKPSRPSATHTSYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDNFEYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVALTSHGAGISSFMQGNSQYKTTSSDNHSFFPSELPARPRLEAQSGDSRGRNSDNLRILDGLDDGKVRKHSRPERIIREIVSESITVMALTIQELTDDVIASSKEYLKNLIEKPDKKEELVSLQNRLDRRSDLTKESLSKCHKVQLEVLVALKMGLSSFLSSKVQLSEMVEIFLYKRCRNVTCMSLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCANSTCSWIGCDVCSHWCHATCGIQRNLIKPGPSLKGPSGTSEVQFHCLGCGHASEMFGFVKDVFLYCAKDWGLETLMKELDCVRRIFRASEDRKGKELHVKTDDLLLKLQTKLVSPSEACNYIVQFFNYADSMSDFPASGGISSKDLAASQTNLTKGIPSLSKPNPLLPNYGYEMGYSRSHPDAMSSEVLQKDLKASMLSELKNEADFHLGALLRKGGLESLGSIVRIKEAEARMFQTKADEARREAEGFQRMIRTKTAQMEEEYAEKLSKLCLHKTEETQRKKMDELKVLENSYFDYYKMKKRMQEEIDGLLRRMEATKQQWV 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8742g00002 806 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 104 805 IPR004082 -
Vium8742g00002 806 Coils Coil 784 806 - -
Vium8742g00002 806 Coils Coil 139 159 - -
Vium8742g00002 806 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 395 410 IPR004082 -
Vium8742g00002 806 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 702 722 IPR004082 -
Vium8742g00002 806 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 356 378 IPR004082 -
Vium8742g00002 806 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 434 455 IPR004082 -
Vium8742g00002 806 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 480 500 IPR004082 -
Vium8742g00002 806 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 553 572 IPR004082 -
Vium8742g00002 806 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 741 763 IPR004082 -
Vium8742g00002 806 Coils Coil 708 742 - -
Vium8742g00002 806 Pfam Coiled-coil region of Oberon 667 795 IPR032535 -
Vium8742g00002 806 Pfam PHD - plant homeodomain finger protein 443 567 IPR032881 -
Vium8742g00002 806 CDD PHD_OBE1_like 473 532 IPR047578 -
Vium8742g00002 806 MobiDBLite consensus disorder prediction 1 23 - -
Vium8742g00002 806 MobiDBLite consensus disorder prediction 281 296 - -
Vium8742g00002 806 MobiDBLite consensus disorder prediction 281 322 - -
Vium8742g00002 806 MobiDBLite consensus disorder prediction 133 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8742g00002 Vium-Chr8742 87157 91396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8742g00002 443 540 PHD Gene Family AT5G57380 28.571 2.21e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8742g00002 - - gmx:100820216 1400.96