Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8742g00001 ATGATGACTCCAAACTTGAACTTGGAAGCTGAAAATCATTCAGAAGGAAGTAGCCAGGTGGCATCCAATGTCTCCTTGCATGAAGCATCTTATGATCTTACAAAGGGCAGCACCACCACTTCCTCCTGTCTGACAAAGGATGAAACTGATCCAGGTTCTGTTACCCTTGACTTGACACTCAACTTCAATTCCAGTGATAGTGAGTTGAAAGGTTCTAGTGATGCTAGCAGTGAAGTGGGAGCTGAACCTCCTGCTTCAGCATCAGCAACTCCCAGGGTTTTTTCTTGTAACTACTGCAGGAGGAAGTTCTATAGTTCGCAGGCATTAGGAGGCCATCAAAATGCTCACAAAAGGGAGAGGACAATGGCTAAGCGTGCATTGAGAATGGGAATGTTCACTGAGAGGTACACAAGTTTGGCATCTCTACCTCTTCATGGTTCACCTTTTAGGTCTCTTGGTCTTGAAGCTCATTCTGCAATGCACCAAAGACACGTCTCATCCTCAATGAGAACTCCTGATATGAGAGCCGCTGCAAGATTTGAAAGAAACCATTTTGGATCACTGGTTTTCATGGAAGATGATGATGTTGGATTGTTTTGGCCTGGAAGTTTCAGACAGGTAGACCAAGGAGCTGGTGTTACTGAAGGACATGTTCAAAGCTCAAATCCCAGTCTTGTTCCAATAGTGCCTCCTCCACCACAAGCTTCTGCTTCTCCGGATCTCACATTGAAGCTTTGA 738 0.4512 MMTPNLNLEAENHSEGSSQVASNVSLHEASYDLTKGSTTTSSCLTKDETDPGSVTLDLTLNFNSSDSELKGSSDASSEVGAEPPASASATPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKRALRMGMFTERYTSLASLPLHGSPFRSLGLEAHSAMHQRHVSSSMRTPDMRAAARFERNHFGSLVFMEDDDVGLFWPGSFRQVDQGAGVTEGHVQSSNPSLVPIVPPPPQASASPDLTLKL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8742g00001 245 SUPERFAMILY beta-beta-alpha zinc fingers 92 122 IPR036236 -
Vium8742g00001 245 MobiDBLite consensus disorder prediction 66 89 - -
Vium8742g00001 245 MobiDBLite consensus disorder prediction 211 245 - -
Vium8742g00001 245 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 168 IPR044246 GO:0009788
Vium8742g00001 245 FunFam Zinc finger protein 2 70 140 - -
Vium8742g00001 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 121 IPR013087 -
Vium8742g00001 245 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Vium8742g00001 245 MobiDBLite consensus disorder prediction 1 25 - -
Vium8742g00001 245 Gene3D Classic Zinc Finger 71 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8742g00001 Vium-Chr8742 63076 67001 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8742g00001 88 245 C2H2 Transcription Factor Family AT1G66140 46.196 5.12e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium8742g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8742g00001 - - gmx:100775305 421.394