Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8721g00004 ATGAATTTCCCATATCTTACTAGCTTCTCCGAACGTGTCGTTGCTCCTCTTCATGCCACAGTTCCCACTACAATTATCAGGGGCAATAAGGCGGAGAGTTTTGCAATTGAAGGGCGTAATCTGAGATTCTCATTCACGACGAGGCAAACGCAAGATGTGCCTGTTCTTAGGGATTGTTCAATTCGCATTCCTTGCGGGCAGTTTTGGATGCTTCTTGGACCCAATGGGTGTGGAAAATCTACCCTCTTGAAGATTTTGGCTGGTCTCTTGACCCCAACTTCAGGAACAGTGAATGTGAATGAACCTAAAAGTTTCGTTTTCCAAAATCCAGATCATCAGGTGGTGCTGCCTACTGTGGATGCTGATGTTGCATTTGGTCTTGGTAAGATCGATTTGACTCACGATGAAGTCAGGTCTAGGGTGTCGAGAGCTTTGCATGCTGTAGGGCTGACTGACTACATGAAGAGATCTGTCCAAACTCTGAGTGGTGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTAGCAGAAGCTTGTAAAGTTCTGTTGTTGGATGAGCTCACCACATTCTTAGATGAAACTGACCAGGTCGGGGTTATCAAAGCTGTCAGGAACTCTGTGGATACCTCTGCAGAAGTTACGGCATTATGGGTCACCCATCGTTTGGAAGAACTAGAATACGCAGATGGTGCCATCTACATGGAGGATGGAAAAGTTGTCATGCATGGAGATGCCGCTAGCATTAGGAGTTTCATTGAAGCCAGACAATCTGCTTATATAAACCAGATCAATTCTTAA 798 0.4574 MNFPYLTSFSERVVAPLHATVPTTIIRGNKAESFAIEGRNLRFSFTTRQTQDVPVLRDCSIRIPCGQFWMLLGPNGCGKSTLLKILAGLLTPTSGTVNVNEPKSFVFQNPDHQVVLPTVDADVAFGLGKIDLTHDEVRSRVSRALHAVGLTDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQVGVIKAVRNSVDTSAEVTALWVTHRLEELEYADGAIYMEDGKVVMHGDAASIRSFIEARQSAYINQINS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8721g00004 265 CDD ABC_cobalt_CbiO_domain1 37 238 IPR015856 GO:0005524|GO:0016020|GO:0055085
Vium8721g00004 265 FunFam ABC transporter I family member 10 32 262 - -
Vium8721g00004 265 Gene3D - 31 264 IPR027417 -
Vium8721g00004 265 ProSitePatterns ABC transporters family signature. 161 175 IPR017871 GO:0005524|GO:0016887
Vium8721g00004 265 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 253 IPR027417 -
Vium8721g00004 265 Pfam ABC transporter 56 188 IPR003439 GO:0005524
Vium8721g00004 265 SMART AAA_5 65 238 IPR003593 GO:0016887
Vium8721g00004 265 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 261 IPR003439 GO:0005524
Vium8721g00004 265 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 36 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8721g00004 Vium-Chr8721 18155 21709 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8721g00004 36 243 Calmodulin-binding Proteins AT2G36910 29.646 6.72e-21 90.1