Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8721g00003 ATGAATTTCCCATATCTTACTAGCTTCTCCGAACGTGTCGTTGCTCCTCTTCATGCCACAGTTCCCACTACAATTATCAGGGGCAATAAGGCGGAGAGTTTTGCAATTGAAGGGCGTAATCTGAGATTCTCATTCACGACGAGGCAAACGCAAGATGTGCCTGTTCTTAGGGATTGTTCAATTCGCATTCCTTGCGGGCAGTTTTGGATGCTTCTTGGACCCAATGGGTGTGGAAAATCTACCCTCTTGAAGATTTTGGCTGGTCTCTTGACCCCAACTTCAGGAACAGTGAATGTGAATGAACCTAAAAGTTTCGTTTTCCAAAATCCAGATCATCAGGTGGTGCTGCCTACTGTGGATGCTGATGTTGCATTTGGTCTTGGTAAGATCGATTTGACTCACGATGAAGTCAGGTCTAGGGTGTCGAGAGCTTTGCATGCTGTAGGGCTGACTGACTACATGAAGAGATCTGTCCAAACTCTGAGTGGTGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTAGCAGAAGCTTGTAAAGTTCTGTTGTTGGATGAGCTCACCACATTCTTAGATGAAACTGACCAGATGGCTTGCACTTTTCATTTAAGGTCGGGGTTATCAAAGCTGTCAGGAACTCTGTGGATACCTCTGCAGAAGTTACGGCATTATGGGTCACCCATCGTTTGGAAGAACTAG 699 0.4621 MNFPYLTSFSERVVAPLHATVPTTIIRGNKAESFAIEGRNLRFSFTTRQTQDVPVLRDCSIRIPCGQFWMLLGPNGCGKSTLLKILAGLLTPTSGTVNVNEPKSFVFQNPDHQVVLPTVDADVAFGLGKIDLTHDEVRSRVSRALHAVGLTDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQMACTFHLRSGLSKLSGTLWIPLQKLRHYGSPIVWKN 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8721g00003 232 SMART AAA_5 65 220 IPR003593 GO:0016887
Vium8721g00003 232 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 230 IPR003439 GO:0005524
Vium8721g00003 232 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 210 IPR027417 -
Vium8721g00003 232 Gene3D - 31 221 IPR027417 -
Vium8721g00003 232 ProSitePatterns ABC transporters family signature. 161 175 IPR017871 GO:0005524|GO:0016887
Vium8721g00003 232 PANTHER ABC TRANSPORTER I FAMILY MEMBER 10 36 211 - -
Vium8721g00003 232 CDD ABC_cobalt_CbiO_domain1 37 193 IPR015856 GO:0005524|GO:0016020|GO:0055085
Vium8721g00003 232 Pfam ABC transporter 56 188 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8721g00003 Vium-Chr8721 18155 21709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8721g00003 36 196 Calmodulin-binding Proteins AT2G36910 29.775 1.95e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8721g00003 - - vra:106780648 419.468