Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8721g00001 ATGCCCACTTGGTGGGGTAAAAAGTCCAGCAAGAGCAAGGACCAAGAGGACCACCACCCGCATGGCGGCGGCGGCGGCGGGAGTACCAGCGTTCTTCACTTCAACTTCATCAAGCCCAAGACTAGGCCCAACAAGAGCTTCGACGAAGCTGTCCACGTCCGCAATTCCCCACGCGCTAGCCGCGATTTAGCTCCCTCCACCGCCGACTCCGACGAGAAGCGGGGGCTCCCCTTGCCTCGCCCCTCTGTCTCTTCCACGCAAAGCTTCAGCATCGACCAGGGCCTCGTCTTCGGATCTGCCTCCGTTTCAGGCTCTAGCGTCAGCTCCAGTGGCTCCTACGAGGATCATCCCTCATATCACGCTCAGATTACTGGTTCTAGAGCGCAAGGTGACGTGAAGTTCCATGTGAGGTCTAAAAGCCCAGGTCCTGGGTCAAGAGGGCCCACCAGCCCAACATCACCTCTTCATCCGAAGTTGCCTATTTTGAGCCTTGACTCTCCTACAGGCAGACAAGAAGACGGAAGGGGTGAATGCCATCCGTTGCCTCTTCCACCGGGCTCTCCTACTAGCCCTTCTTCTTCTCTTTCCAGCGCTAGAGCAAATGGGGTGGCAGAACACACTACCGGTAACCTTTCAAAGTGGAAGAAGGGAAAGCTTCTAGGACGGGGAACTTTTGGGCATGTTTACCTGGGATTCAATAGTAATAGTGGACAATTGTGTGCAATAAAGGAAGTCAGGGTTGTCTGTGATGACCAAACGTCAAAAGAGTGCCTCAAACAACTTAATCAGGAGATCAATTTGCTCAGTCAGCTTTCACATTCAAACATTGTTCAATACTATGGGAGTGATTTGGGAGAAGAAACACTCTCCGTTTATTTGGAATATGTCTCTGGTGGTTCTATTCACAAATTACTTCAGGAATATGGGGCCTTCAAAGAGCCTGTTATTCAAAATTATACCAGGCAAATTGTCTCTGGTCTTTGCTATCTTCATGGGAGAAATACAGTGCATAGGGATATCAAGGGGGCTAACATACTAGTTGATCCTAATGGTGAAATCAAGCTGGCAGACTTTGGAATGGCCAAACATATAAATTCTTCTTCCTCCATGCTTTCTTTCAAAGGGAGTCCATACTGGATGGCACCTGAGGTTGTAATGAATACAAATGGCTATAGCCTTCCTGTTGATATATGGAGCTTGGGATGCACAATTCTTGAAATGGCAACATCAAAGCCTCCCTGGAATCAATATGAAGGGGTAGCGGCAATATTTAAAATTGGTAACAGTAGAGATATGCCTGAAATCCCTGATCATCTCTCAAGCGATGCAAAGAATTTCATTCAGCAATGCTTACAAAGAGATCCATCGGCCCGCCCCACAGCCCAGGAGTTACTAGATCACGCCTTCATTCGAGATCAACCAGCAACAAAAGCTACAAATGTCAGAATAACTAGGGATGCTTTCCCCTGCAGTTTTGATGGAAGTCGGACACCGCCGCCAGTTTTAGATCATTCCAATAGAACGAGTATAAATTCATTGGATGGAGAATATGGAACAAAGCCAGTTCCTGTTACTTCACGTGCAGTAAGGAGCCCAAGAGATAACACAAGGGTGATCACATCTTTACCAGTATCGCCCTGCTCAAGTCCATTGAGACAGTATGGGCCAGCCCACAAGAGCTGTTTTCTTTCTCCTCCTCATCCAACTTACACTTTGATGGGGCAAAATACCCTCCCTTCATATCCAGTGAGATCAAATGCAACATTCACTCTTGATCCTTTTCATGAAAAATCTTTTTACAAAGCCCACACACCGGGTGGATCCCCTAGAAGATTCATTTGA 1842 0.4761 MPTWWGKKSSKSKDQEDHHPHGGGGGGSTSVLHFNFIKPKTRPNKSFDEAVHVRNSPRASRDLAPSTADSDEKRGLPLPRPSVSSTQSFSIDQGLVFGSASVSGSSVSSSGSYEDHPSYHAQITGSRAQGDVKFHVRSKSPGPGSRGPTSPTSPLHPKLPILSLDSPTGRQEDGRGECHPLPLPPGSPTSPSSSLSSARANGVAEHTTGNLSKWKKGKLLGRGTFGHVYLGFNSNSGQLCAIKEVRVVCDDQTSKECLKQLNQEINLLSQLSHSNIVQYYGSDLGEETLSVYLEYVSGGSIHKLLQEYGAFKEPVIQNYTRQIVSGLCYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSSSMLSFKGSPYWMAPEVVMNTNGYSLPVDIWSLGCTILEMATSKPPWNQYEGVAAIFKIGNSRDMPEIPDHLSSDAKNFIQQCLQRDPSARPTAQELLDHAFIRDQPATKATNVRITRDAFPCSFDGSRTPPPVLDHSNRTSINSLDGEYGTKPVPVTSRAVRSPRDNTRVITSLPVSPCSSPLRQYGPAHKSCFLSPPHPTYTLMGQNTLPSYPVRSNATFTLDPFHEKSFYKAHTPGGSPRRFI 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8721g00001 613 SUPERFAMILY Protein kinase-like (PK-like) 212 538 IPR011009 -
Vium8721g00001 613 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 65 478 - -
Vium8721g00001 613 MobiDBLite consensus disorder prediction 134 208 - -
Vium8721g00001 613 MobiDBLite consensus disorder prediction 501 515 - -
Vium8721g00001 613 SMART serkin_6 214 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8721g00001 613 MobiDBLite consensus disorder prediction 1 87 - -
Vium8721g00001 613 FunFam Mitogen-activated protein kinase kinase kinase 212 494 - -
Vium8721g00001 613 CDD STKc_MEKK1_plant 213 470 - -
Vium8721g00001 613 ProSiteProfiles Protein kinase domain profile. 214 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8721g00001 613 MobiDBLite consensus disorder prediction 190 208 - -
Vium8721g00001 613 Pfam Protein kinase domain 215 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8721g00001 613 ProSitePatterns Protein kinases ATP-binding region signature. 220 243 IPR017441 GO:0005524
Vium8721g00001 613 MobiDBLite consensus disorder prediction 42 56 - -
Vium8721g00001 613 MobiDBLite consensus disorder prediction 494 520 - -
Vium8721g00001 613 Gene3D Transferase(Phosphotransferase) domain 1 211 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8721g00001 Vium-Chr8721 2849 14498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8721g00001 1 533 MAP Kinase Kinase Kinase AT1G53570 57.014 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vium8721g00001 Pkinase 3.7e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8721g00001 K04421 - gmx:100813122 1016.91