Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium871g00033 ATGTTCCCCACGGCTATTTCCAATTCAACTTCTTTGTCCGAGGATGCCAGTGTTTCTTCTGGTACAAAACTTCAGGACCTGGGAGGACTCACTCACGCCCTTTCTAACATTTCTCCTCAACAACAACCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCCTTATCTCCGAAGACCCTTTTGGCTACCAATAGGTTTGTTTGCGAGATCTGTCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTTCACAGGAGGGGCCATAACCTCCCCTGGAAGCTTAAGCAAAGGAGCAGTAAAGAGGTAAAAAAGAAAGCTTACGTTTGCCCTGAACCTTCATGCGTTCACCACAACCCCTCCAGGGCCCTGGGGGATCTTACAGGAATCAAGAAACACTACTGCAGAAAGCATGGTGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATATGCGGTTCAGTCAGATTGGAAAGCTCACTCAAAAACCTGTGGTACTAGAGAATATAGATGTGACTGTGGAACCCTTTTCTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTCTGTGATGCATTGGCGGAAGAAAGTGCAAGACTATCAGCAAATCAATTAGCCGTAGCAGCCACCACCACGACAAACCCATTCCAATCCCTCTTTCTTTTCCAAACTCAACAACAGAACTTCCAAAACCACCATATGACCAGCTTCAACCAATGGGACTCGTCTCAAGAAAACCCTAACCCTAGCAACATTGCCACTTCCCTCCAAATCAAGCCAGAATCTCAAACTTTCCACAACCCCACTCTCTCTTCACTTCTTCAACACCAAGAGCAGCCACATCCCAACAAGGGCATGATAACCTCACCCTTCGGGAACCTCCACGTGTCCTCACAAGCCTCCAGCGCTACCACGTCAGCATACATGTCAGCCACTGCGTTGCTTCAAAAGGCTGCATCCGTTGGAGCCGCTGCCATGACGGGCCCAGGCCCTGCTGCTGTTGGGCCTCGGAGCGCAATGGGTCACATGACTCAGCTCGGAACAGCGAGCCAACTCGACCCTCTGGTGGTGCCGGATAGCTACATGAGAGGATTCCCCGGTCGTAGCCTCAAGAGTGACCGTCTCACTAGGGACTTCCTCGGACTCACGCCAGAAGCTAACGGCGGAGTTGACGGCACCGCGGTTGACGTTAGCACGAACGTGAAGGATATGCTGACGTTCGCAGGGGGTGTAGAGTACCACCAACCGCTCCGTCAGCATCACCACCACGGGCTTCTCAAGCCCCAACAAGGCTTCGGTTTCCTTGAGACAACCACTGCCCCCGAGACGTGGGGGAATTGTTGA 1374 0.5102 MFPTAISNSTSLSEDASVSSGTKLQDLGGLTHALSNISPQQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAVAATTTTNPFQSLFLFQTQQQNFQNHHMTSFNQWDSSQENPNPSNIATSLQIKPESQTFHNPTLSSLLQHQEQPHPNKGMITSPFGNLHVSSQASSATTSAYMSATALLQKAASVGAAAMTGPGPAAVGPRSAMGHMTQLGTASQLDPLVVPDSYMRGFPGRSLKSDRLTRDFLGLTPEANGGVDGTAVDVSTNVKDMLTFAGGVEYHQPLRQHHHHGLLKPQQGFGFLETTTAPETWGNC 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium871g00033 457 ProSitePatterns Zinc finger C2H2 type domain signature. 78 98 IPR013087 -
Vium871g00033 457 Gene3D Classic Zinc Finger 110 200 - -
Vium871g00033 457 SUPERFAMILY beta-beta-alpha zinc fingers 75 172 IPR036236 -
Vium871g00033 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 98 IPR013087 -
Vium871g00033 457 FunFam protein indeterminate-domain 12-like 55 123 - -
Vium871g00033 457 Gene3D Classic Zinc Finger 72 99 - -
Vium871g00033 457 MobiDBLite consensus disorder prediction 1 59 - -
Vium871g00033 457 MobiDBLite consensus disorder prediction 1 48 - -
Vium871g00033 457 FunFam protein indeterminate-domain 5, chloroplastic-like 130 209 - -
Vium871g00033 457 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 405 IPR031140 -
Vium871g00033 457 SMART c2h2final6 76 98 IPR013087 -
Vium871g00033 457 SMART c2h2final6 152 172 IPR013087 -
Vium871g00033 457 SMART c2h2final6 117 147 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium871g00033 Vium-Chr871 255879 260026 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium871g00033 15 444 IDZ Gene Family AT4G02670 49.778 5.67e-131 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium871g00033 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium871g00033 K25870 - gmx:100788975 718.768