Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium871g00032 ATGAACTATTTGTACCCTGTGAAAGAAGAGTACTTTGAATCTCCACCGCCGTCCTCCTCATCGTCGCCAACGTCTCAAACAGGAGGTGATGAGTCAGCTGTGGTTTCTCTTCCTAGGCCAATGGAGGGGCTTCACGAAGTAGGGCCACCTCCATTTCTGACCAAGACTTATGATGCCGTGGAGGACCCTACCACTAGCCACATAGTTTCATGGAGCAGAGGTGGTTCCAGCTTTGTGGTTTGGGATCCTCACGCTTTCTCCAGAGACCTTCTCCCTCGATACTTCAAGCATAACAATTTCTCCAGCTTTGTAAGGCAACTAAACACTTACGGTTTTAGAAAGATTGATCCCGATAGGTGGGAGTTTGCAAACGAAGGATTCCTGAGAGGGCACAGGCACCTTTTGGCAAACATAAGGAGGAGAAAGCAACCTTCTCAGCCTTCCACTTCTCAACAAGGACAAGGTCACTGTGTTGAAGTTGGTCGTTTTGGACTTGATGGAGAGGTTGATCGCTTAAAGCGTGACAAGCACGTGCTGATGATGGAGCTTGTGAAGCTGAGACAGCAGCAGCAGAATACGAGGTCGTACCTTGAGGAAATGGAGGAGAGGCTACGAGGGACAGAAATTAAGCAGCAGCAGATGATGTCTTTCTTGGCTAGAGCTTTGAAGAACCCCACCTTCATCCAGCAGCTACTCCAGCAGAAAGAGAAGAGGAAGGAGCTTGAAGAGGCAATGTCGAAGAAGAGGAGAAGACCGATCGAGCAAGGACCAAATGGGGTTGGAGAATCAAGCATTGGAAGGGAAGGAAGAAGCAGCGTTAAAGTGGAGTTCCAAGTGTTTGGGGAATATGGATTTGGAGTCTCAGAGTTGGAAGTGTTGGCTTTGGAGATGCAAGGTTATGGTAGGGGAAAAAGGGAACAAGAGGAAGAGCCCGAGGCACTAGAATCACAGGAGAGGTTGGAGAAAGAGCTCGATGAAGGTTTCTGGGAAGAACTGTTCAGTGAGGGTTTTGAGGGTGAATTAGATATTCCAACTTCACAAGACCCAGATGACGAAGAAGATGTCAATGTTTTAGCCAATCGCTTTGGTTACTTAGGGTCAAGTCCTAAATGA 1113 0.478 MNYLYPVKEEYFESPPPSSSSSPTSQTGGDESAVVSLPRPMEGLHEVGPPPFLTKTYDAVEDPTTSHIVSWSRGGSSFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGHRHLLANIRRRKQPSQPSTSQQGQGHCVEVGRFGLDGEVDRLKRDKHVLMMELVKLRQQQQNTRSYLEEMEERLRGTEIKQQQMMSFLARALKNPTFIQQLLQQKEKRKELEEAMSKKRRRPIEQGPNGVGESSIGREGRSSVKVEFQVFGEYGFGVSELEVLALEMQGYGRGKREQEEEPEALESQERLEKELDEGFWEELFSEGFEGELDIPTSQDPDDEEDVNVLANRFGYLGSSPK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium871g00032 370 Coils Coil 169 203 - -
Vium871g00032 370 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 38 259 IPR027725 -
Vium871g00032 370 Pfam HSF-type DNA-binding 52 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium871g00032 370 Gene3D - 45 142 IPR036388 -
Vium871g00032 370 PRINTS Heat shock factor (HSF) domain signature 103 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium871g00032 370 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium871g00032 370 PRINTS Heat shock factor (HSF) domain signature 52 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium871g00032 370 SUPERFAMILY "Winged helix" DNA-binding domain 48 141 IPR036390 -
Vium871g00032 370 Coils Coil 231 251 - -
Vium871g00032 370 SMART hsfneu3 48 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium871g00032 370 FunFam Heat shock transcription factor 1 45 142 - -
Vium871g00032 370 MobiDBLite consensus disorder prediction 14 32 - -
Vium871g00032 370 MobiDBLite consensus disorder prediction 239 267 - -
Vium871g00032 370 ProSitePatterns HSF-type DNA-binding domain signature. 91 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vium871g00032 370 MobiDBLite consensus disorder prediction 239 255 - -
Vium871g00032 370 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium871g00032 Vium-Chr871 234422 236995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium871g00032 25 368 HSF AT3G22830 53.826 4.97e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vium871g00032 HSF_DNA-bind 1.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium871g00032 K09419 - gmx:100794264 578.556