Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium871g00024 ATGTTCTTAAAAAGATTCGTCTTGCTCGTCAAACTGACAGAACCCGCAGATCTGCCCACCAGGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTGGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGGGATATGGCTGAAGCTATCAAAAAGGCTAAGGGTGTCAACTTTTCTGAAGAGGTCAACCTTGTGCATGCAGAAACTTTGCAAGTGGCTCGTTCAATTGCTGATGGCTCTTGATTACTTGCATGGAAATCATATCCTTCATCGTGACGTCAAGTGTTCAAATATATTTTTGACAAAAGATCGAGATATACGTCTAGGGGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAGTCGTTGGGACTCCCAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTATCTATGAAATGGCTGCTCACAAGCCAGCATTTAAAGCACTTGAGAATGACATACAATCATTGATTAACAAAATAAACAAGTGTATAGTAGCTCCCCTGCCAACTATGTATACTGCTGCTTTTCGAGGGCTCGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGGCCAACTGCTTCAGAATTACTAAATCATCCGCATCTTCAGCCTTACATTCAAAAGATTCACCTTAAATTAAATAGCCCCAGAAGAAGTACTTTTCCTTTTCAATGGCCGGAGCCAAATTATGTAAGGAGAACTCGGTTCGTGGAGCCAGAATCTGTTTCTACTCTTTCTGACCAAGATAAATGCTTGTCATTTAGCAAGGACAGGGCACTGAATCCTAGCATTTCTGGAACTGAACAAGTTTCTCAGTGTTCTACTCAAAGAGCACATGGATTATCCACTTGTTCAGAAGAGAAAATCTATGAATTATCTGTAGGTTGTGTTGGTAACAAATACAATCCTGGTACGAAGTTCTCAACAGTTGAAAGAACACCAAGATTGAGGGCAGTTACAGTTTCTGCCACTGCCAAAAGGCAAACAATGGCACCATCAAAGACAACCTATCCTGGTCCAGACCGAGATTCACTTCCAGCATCTAAGGGACCATCTGGAAGGTTTTCCTCACCAACAAGAGCCAGAGCGACGACAAACTTGTACACCAATTTCTGTGTCCTTGGAAGTGTGGACTCTCCTAATGTCTCTGTTAATGCACCACGAATCGACAAGATGGCTGAATACCCACTGGCTTACAGTGAGGATCCTTTTTTCCCTGTTCGTGGACCATCATCAACTTCAGCTCGCTTCTCTTCAAGCTCAACACGGAGTACTGCTGATTGCTCCATCACAATGGTCAAGTGTACAATTCAGGAGGACAAAGTTACTGTCCCCAACATTATCAGTGATGCTTGCCCTGGTCCAAAGGCAACTCAATGCCCTTCTGAGCATGTAAAAGCTTGCGTTTCTATTCGCTCCTCTGCTGAGGTGGATCAGCGCCGCTTTGACACGTCATCATACCAGCAACGTGCAGAGGCTTTGGAGGGTTTGCTGGAGTTCAGTGCCAGACTCCTTCAACAACAAAGGTTTGATGAGCTAGGGGTGTTGCTGAAGCCGTTCGGGCCTGAGAAGGTTTCTCCTAGGGAAACAGCTATTTGGTTGACCAAGAGCTTTAAGGAAACTGTGGTCTAA 1737 0.4381 MFLKRFVLLVKLTEPADLPTRRWSLYLKFEIHLLWSIKIPGWKRVVLYVSSLAIVKEGIWLKLSKRLRVSTFLKRSTLCMQKLCKWLVQLLMALDYLHGNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKALENDIQSLINKINKCIVAPLPTMYTAAFRGLVKSMLRKNPELRPTASELLNHPHLQPYIQKIHLKLNSPRRSTFPFQWPEPNYVRRTRFVEPESVSTLSDQDKCLSFSKDRALNPSISGTEQVSQCSTQRAHGLSTCSEEKIYELSVGCVGNKYNPGTKFSTVERTPRLRAVTVSATAKRQTMAPSKTTYPGPDRDSLPASKGPSGRFSSPTRARATTNLYTNFCVLGSVDSPNVSVNAPRIDKMAEYPLAYSEDPFFPVRGPSSTSARFSSSSTRSTADCSITMVKCTIQEDKVTVPNIISDACPGPKATQCPSEHVKACVSIRSSAEVDQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFDELGVLLKPFGPEKVSPRETAIWLTKSFKETVV 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium871g00024 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 102 114 IPR008271 GO:0004672|GO:0006468
Vium871g00024 578 SUPERFAMILY Protein kinase-like (PK-like) 74 303 IPR011009 -
Vium871g00024 578 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 80 534 - -
Vium871g00024 578 Pfam Protein kinase domain 73 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium871g00024 578 MobiDBLite consensus disorder prediction 356 394 - -
Vium871g00024 578 Gene3D Transferase(Phosphotransferase) domain 1 69 285 - -
Vium871g00024 578 ProSiteProfiles Protein kinase domain profile. 1 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium871g00024 578 SMART serkin_6 1 237 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium871g00024 Vium-Chr871 167308 173429 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium871g00024 47 238 MAP Kinase Kinase Kinase AT4G08500 36.923 3.27e-28 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vium871g00024 Pkinase 1.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium871g00024 K08857 - gmx:100792678 814.298