Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium871g00023 ATGGAGCAGTACGAAATTCTAGAACAAATTGGCAAGGGTGCATTTGGTTCTGCTCTGCTTGTGAGGCATAGGCACGAAAAGAAAATGTATGTTCTTAAAAAGATTCGTCTTGCTCGTCAAACTGACAGAACCCGCAGATCTGCCCACCAGGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTGGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGGGATATGGCTGAAGCTATCAAAAAGGCTAAGGGTGTCAACTTTTCTGAAGAGAAACTTTGCAAGTGGCTCGTTCAATTGCTGATGGCTCTTGATTACTTGCATGGAAATCATATCCTTCATCGTGACGTCAAGTGTTCAAATATATTTTTGACAAAAGATCGAGATATACGTCTAGGGGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAGTCGTTGGGACTCCCAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTATCTATGAAATGGCTGCTCACAAGCCAGCATTTAAAGCACTTGACATACAATCATTGATTAACAAAATAAACAAGTGTATAGTAGCTCCCCTGCCAACTATGTATACTGCTGCTTTTCGAGGGCTCGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGGCCAACTGCTTCAGAATTACTAAATCATCCGCATCTTCAGCCTTACATTCAAAAGATTCACCTTAAATTAAATAGCCCCAGAAGAAGTACTTTTCCTTTTCAATGGCCGGAGCCAAATTATGTAAGGAGAACTCGGTTCGTGGAGCCAGAATCTGTTTCTACTCTTTCTGACCAAGATAAATGCTTGTCATTTAGCAAGGACAGGGCACTGAATCCTAGCATTTCTGGAACTGAACAAGTTTCTCAGTGTTCTACTCAAAGAGCACATGGATTATCCACTTGTTCAGAAGAGAAAATCTATGAATTATCTGTAGGTTGTGTTGGTAACAAATACAATCCTGGTACGAAGTTCTCAACAGTTGAAAGAACACCAAGATTGAGGGCAGTTACAGTTTCTGCCACTGCCAAAAGGCAAACAATGGCACCATCAAAGACAACCTATCCTGGTCCAGACCGAGATTCACTTCCAGCATCTAAGGGACCATCTGGAAGGTTTTCCTCACCAACAAGAGCCAGAGCGACGACAAACTTGTACACCAATTTCTGTGTCCTTGGAAGTGTGGACTCTCCTAATGTCTCTGTTAATGCACCACGAATCGACAAGATGGCTGAATACCCACTGGCTTACAGTGAGGATCCTTTTTTCCCTGTTCGTGGACCATCATCAACTTCAGCTCGCTTCTCTTCAAGCTCAACACGGAGTACTGCTGATTGCTCCATCACAATGGTCAAGTGTACAATTCAGGAGGACAAAGTTACTGTCCCCAACATTATCAGTGATGCTTGCCCTGGTCCAAAGGCAACTCAATGCCCTTCTGAGCATGTAAAAGCTTGCGTTTCTATTCGCTCCTCTGCTGAGGTGGATCAGCGCCGCTTTGACACGTCATCATACCAGCAACGTGCAGAGGCTTTGGAGGGTTTGCTGGAGTTCAGTGCCAGACTCCTTCAACAACAAAGGTTTGATGAGCTAGGGGTGTTGCTGAAGCCGTTCGGGCCTGAGAAGGTTTCTCCTAGGGAAACAGCTATTTGGTTGACCAAGAGCTTTAAGGAAACTGTGGTCTAA 1800 0.4372 MEQYEILEQIGKGAFGSALLVRHRHEKKMYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKAKGVNFSEEKLCKWLVQLLMALDYLHGNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKALDIQSLINKINKCIVAPLPTMYTAAFRGLVKSMLRKNPELRPTASELLNHPHLQPYIQKIHLKLNSPRRSTFPFQWPEPNYVRRTRFVEPESVSTLSDQDKCLSFSKDRALNPSISGTEQVSQCSTQRAHGLSTCSEEKIYELSVGCVGNKYNPGTKFSTVERTPRLRAVTVSATAKRQTMAPSKTTYPGPDRDSLPASKGPSGRFSSPTRARATTNLYTNFCVLGSVDSPNVSVNAPRIDKMAEYPLAYSEDPFFPVRGPSSTSARFSSSSTRSTADCSITMVKCTIQEDKVTVPNIISDACPGPKATQCPSEHVKACVSIRSSAEVDQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFDELGVLLKPFGPEKVSPRETAIWLTKSFKETVV 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium871g00023 599 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vium871g00023 599 MobiDBLite consensus disorder prediction 377 415 - -
Vium871g00023 599 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Vium871g00023 599 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium871g00023 599 SUPERFAMILY Protein kinase-like (PK-like) 1 324 IPR011009 -
Vium871g00023 599 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vium871g00023 599 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium871g00023 599 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vium871g00023 599 Gene3D Transferase(Phosphotransferase) domain 1 86 306 - -
Vium871g00023 599 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Vium871g00023 599 CDD STKc_Nek 3 258 - -
Vium871g00023 599 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 555 - -
Vium871g00023 599 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium871g00023 Vium-Chr871 166046 173429 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium871g00023 10 259 MAP Kinase Kinase Kinase AT1G53570 31.765 6.36e-38 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vium871g00023 Pkinase 1.3e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium871g00023 K08857 - gmx:100805201 1017.68