Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium871g00022 ATGGAGCAGTACGAAATTCTAGAACAAATTGGCAAGGGTGCATTTGGTTCTGCTCTGCTTGTGAGGCATAGGCACGAAAAGAAAATGTATGTTCTTAAAAAGATTCGTCTTGCTCGTCAAACTGACAGAACCCGCAGATCTGCCCACCAGGAGATGGAGCTTATATCTAAAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTGGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGGGATATGGCTGAAGCTATCAAAAAGGCTAAGGGTGTCAACTTTTCTGAAGAGAAACTTTGCAAGTGGCTCGTTCAATTGCTGATGGCTCTTGATTACTTGCATGGAAATCATATCCTTCATCGTGACGTCAAGTGTTCAAATATATTTTTGACAAAAGATCGAGATATACGTCTAGGGGACTTTGGTCTTGCTAAAATGTTGACATCTGATGATCTTGCTTCCTCAGTCGTTGGGACTCCCAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTATCTATGAAATGGCTGCTCACAAGCCAGCATTTAAAGCACTTGAGAATGACATACAATCATTGATTAACAAAATAAACAAGTGTATAGTAGCTCCCCTGCCAACTATGTATACTGCTGCTTTTCGAGGGCTCGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTGAGGCCAACTGCTTCAGAATTACTAAATCATCCGCATCTTCAGCCTTACATTCAAAAGATTCACCTTAAATTAAATAGCCCCAGAAGAAGTACTTTTCCTTTTCAATGGCCGGAGCCAAATTATGTAAGGAGAACTCGGTTCGTGGAGCCAGAATCTGTTTCTACTCTTTCTGACCAAGATAAATGCTTGTCATTTAGCAAGGACAGGGCACTGAATCCTAGCATTTCTGGAACTGAACAAGTTTCTCAGTGTTCTACTCAAAGAGCACATGGATTATCCACTTGTTCAGAAGAGAAAATCTATGAATTATCTGTAGGTTGTGTTGGTAACAAATACAATCCTGGTACGAAGTTCTCAACAGTTGAAAGAACACCAAGATTGAGGGCAGTTACAGTTTCTGCCACTGCCAAAAGGCAAACAATGGCACCATCAAAGACAACCTATCCTGGTCCAGACCGAGATTCACTTCCAGCATCTAAGGGACCATCTGGAAGGTTTTCCTCACCAACAAGAGCCAGAGCGACGACAAACTTGTACACCAATTTCTGTGTCCTTGGAAGTGTGGACTCTCCTAATGTCTCTGTTAATGCACCACGAATCGACAAGATGGCTGAATACCCACTGGCTTACAGTGAGGATCCTTTTTTCCCTGTTCGTGGACCATCATCAACTTCAGCTCGCTTCTCTTCAAGCTCAACACGGAGTACTGCTGATTGCTCCATCACAATGGTCAAGTGTACAATTCAGGAGGACAAAGTTACTGTCCCCAACATTATCAGTGATGCTTGCCCTGGTCCAAAGGCAACTCAATGCCCTTCTGAGCATGTAAAAGCTTGCGTTTCTATTCGCTCCTCTGCTGAGGTGGATCAGCGCCGCTTTGACACGTCATCATACCAGCAACGTGCAGAGGCTTTGGAGGGTTTGCTGGAGTTCAGTGCCAGACTCCTTCAACAACAAAGGTTTGATGAGCTAGGGGTGTTGCTGAAGCCGTTCGGGCCTGAGAAGGTTTCTCCTAGGGAAACAGCTATTTGGTTGACCAAGAGCTTTAAGGAAACTGTGGTCTAA 1806 0.4369 MEQYEILEQIGKGAFGSALLVRHRHEKKMYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKAKGVNFSEEKLCKWLVQLLMALDYLHGNHILHRDVKCSNIFLTKDRDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKALENDIQSLINKINKCIVAPLPTMYTAAFRGLVKSMLRKNPELRPTASELLNHPHLQPYIQKIHLKLNSPRRSTFPFQWPEPNYVRRTRFVEPESVSTLSDQDKCLSFSKDRALNPSISGTEQVSQCSTQRAHGLSTCSEEKIYELSVGCVGNKYNPGTKFSTVERTPRLRAVTVSATAKRQTMAPSKTTYPGPDRDSLPASKGPSGRFSSPTRARATTNLYTNFCVLGSVDSPNVSVNAPRIDKMAEYPLAYSEDPFFPVRGPSSTSARFSSSSTRSTADCSITMVKCTIQEDKVTVPNIISDACPGPKATQCPSEHVKACVSIRSSAEVDQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFDELGVLLKPFGPEKVSPRETAIWLTKSFKETVV 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium871g00022 601 Gene3D Transferase(Phosphotransferase) domain 1 86 308 - -
Vium871g00022 601 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium871g00022 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vium871g00022 601 Pfam Protein kinase domain 4 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium871g00022 601 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Vium871g00022 601 SUPERFAMILY Protein kinase-like (PK-like) 1 326 IPR011009 -
Vium871g00022 601 CDD STKc_Nek 3 260 - -
Vium871g00022 601 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 557 - -
Vium871g00022 601 MobiDBLite consensus disorder prediction 379 417 - -
Vium871g00022 601 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vium871g00022 601 FunFam Serine/threonine-protein kinase Nek3 86 334 - -
Vium871g00022 601 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium871g00022 601 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium871g00022 Vium-Chr871 166046 173429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium871g00022 10 261 MAP Kinase Kinase Kinase AT1G53570 30.859 4.43e-37 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vium871g00022 Pkinase 3.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium871g00022 K08857 - gmx:100805201 1012.68