Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8711g00001 ATGTCGAAAGATATGAACAACCAGTTTGAAAGCAATGAGTTTCCTCCATCATCATCATCATCATCATCTTCATCTTCATATTCATATATAGCATCAACTCCGACTCAAACTAATAGTTACAAGAAATGGAGTGAAGAAGAACACAAGTTGTTCCTTAAAGGACTCGAGATATACAAAAGGGGACAATGGACCAATATTTCAAGGTATGTGGTGAAAACCAGGACTCCAGCACAAGTTTCCAGCCATGCACAGCATTACTACAAACATTTGGCCGCACTCAAGAAAGGCAAAAGAAAAAGGTTTTACGACGCGAAAACATCAGACAACAAGGATGCCTTTCTTTCTCATGATCAAGTTCATATGCAAAATGACGATGTCAATGTTTCAGATTACCAAGTTGATGTGCAAAATGATCAAGTTCATATGAAAAATGACGCCGTCTATGTTCCAGATTACCCAGTTAATGTGCAAAATGACGATGTCTATGTTCCAGATTACCAAGTTGACCAAGCTATTTTTGCAGATCTCGACTTCTTAGAAGAATTGACAGATGTGGTCTGA 561 0.3815 MSKDMNNQFESNEFPPSSSSSSSSSSYSYIASTPTQTNSYKKWSEEEHKLFLKGLEIYKRGQWTNISRYVVKTRTPAQVSSHAQHYYKHLAALKKGKRKRFYDAKTSDNKDAFLSHDQVHMQNDDVNVSDYQVDVQNDQVHMKNDAVYVPDYPVNVQNDDVYVPDYQVDQAIFADLDFLEELTDVV 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8711g00001 186 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 91 IPR017930 -
Vium8711g00001 186 MobiDBLite consensus disorder prediction 1 38 - -
Vium8711g00001 186 Pfam Myb-like DNA-binding domain 41 86 IPR001005 -
Vium8711g00001 186 SUPERFAMILY Homeodomain-like 36 90 IPR009057 -
Vium8711g00001 186 Gene3D - 40 93 - -
Vium8711g00001 186 ProSiteProfiles Myb-like domain profile. 42 87 IPR001005 -
Vium8711g00001 186 CDD SANT 42 90 IPR001005 -
Vium8711g00001 186 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 89 IPR006447 GO:0003677
Vium8711g00001 186 ProSiteProfiles SANT domain profile. 41 91 IPR017884 -
Vium8711g00001 186 PANTHER TRANSCRIPTION FACTOR KUA1 7 134 - -
Vium8711g00001 186 SMART sant 39 89 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8711g00001 Vium-Chr8711 22672 23321 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium8711g00001 Myb_DNA-binding 2.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8711g00001 - - vum:124847467 338.576