Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8708g00002 ATGGATTGGGACGGGAAAGAGTTTGCCTGGGATCCACGTGGGCTGGAGCTGGCTAATGGTGAAGGACAGAGGAATGAAGCTGCTTCAGTGGATTTGGGGCTTGGTGAGGAAAAATCACTCCCTGATGTTGCTAAGGACCCTAGAGACTCAAAAACTGTGTCTTCACCATCTGGGTCATCAAAAAGATCCCGCCTTCAGAATGGATCACAGAATATGTGTTGTTCTGTTGATGGATGCACCTCTGACCTCAGTGATTGCAGAGAGTATCATAGGCGCCATAGGGTCTGTGAAAAGCACTCCAAGACCCCAGTTGTGTTGGTGGGGGGCAAACAACAACGGTTCTGCCAGCAATGCAGCAGGTTTCACTCACTTGGGGAGTTTGATGAGGTTAAGAGGAGTTGTAGGAAAAGGCTTGATGGGCATAACAGGCGCAGGAGGAAACCTCAGCCTCCCTCTCTTTTCATGGCTGCTGAGAAATTCATGTACAATTACAAAGGACCTAGAATCCTGCATTTTGGAAGCCCGGAGACATATGTCAACCCTATTATGAGGAGTATGTGGTCTGCCACTGCAAAAACTGGAGCTGAATCTGGTTATGATCCACCTCGACTGTTATACAGAATTGACAAGCACAAGCAAGACAAGGGACATCCTCTGTGGCAAGAAAATGACCCTATTGTAAGCAATGCTAATGGAGCAATACTTGGAGCTCCCATTTGTCAGCCTATTCATGGCACCATCACCCCATCAACCGGTGGAAAGAGCAGCCGAAAGCACTCTTCAGATGCAAAACCTGGATCCTTTGACTCAGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAAAGTCCAGAGTCGAGTATGGTACAATCTAGCATCACATGTCCAATGCAATCTCCATCAGGATCTGTGCATTTTGATACTGTCAATGAATATGCATACTCAGAAACGGAAAAAGATAAGCCTAGTGGTCAAGTATTGGTTCTTGATAACACAACCAACCTTCATTACAATGGAATGCTGCAAATGGGGTTAGATGGTTTGGTTGAAAATGACGACCCACTTACACTTCCCTTCTTGTGGGAGTAG 1092 0.4625 MDWDGKEFAWDPRGLELANGEGQRNEAASVDLGLGEEKSLPDVAKDPRDSKTVSSPSGSSKRSRLQNGSQNMCCSVDGCTSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFMYNYKGPRILHFGSPETYVNPIMRSMWSATAKTGAESGYDPPRLLYRIDKHKQDKGHPLWQENDPIVSNANGAILGAPICQPIHGTITPSTGGKSSRKHSSDAKPGSFDSGCALYLLSTLQSQSPESSMVQSSITCPMQSPSGSVHFDTVNEYAYSETEKDKPSGQVLVLDNTTNLHYNGMLQMGLDGLVENDDPLTLPFLWE 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8708g00002 363 MobiDBLite consensus disorder prediction 1 69 - -
Vium8708g00002 363 Gene3D - 65 135 IPR036893 GO:0003677|GO:0005634
Vium8708g00002 363 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 19 299 IPR044817 GO:0003677
Vium8708g00002 363 FunFam Squamosa promoter-binding-like protein 14 65 135 - -
Vium8708g00002 363 SUPERFAMILY SBT domain 72 153 IPR036893 GO:0003677|GO:0005634
Vium8708g00002 363 Pfam SBP domain 74 147 IPR004333 GO:0003677
Vium8708g00002 363 MobiDBLite consensus disorder prediction 50 69 - -
Vium8708g00002 363 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
Vium8708g00002 363 MobiDBLite consensus disorder prediction 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8708g00002 Vium-Chr8708 42679 46033 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8708g00002 74 172 SBP-box Gene Family AT5G50670 66.667 3.75e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium8708g00002 SBP 1.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8708g00002 - - gmx:100798317 663.299