Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8704g00002 ATGGAGAAGTACGAGAAGCTTGAAAAGGTGGGAGAAGGAACGTATGGGAAAGTGTACAAGGCACGAGAGAAAGCGAGTGGCAACGTGGTGGCGCTGAAGAAGACGCGTCTGGAGATGGACGAAGAAGGTGTGCCTCCGACGGCTCTCCGAGAGGTATCGCTTCTGCAACTTCTCTCCCAATCCATCTACATCGTGCGCCTCCTATCTGTAGAACACGTCGATAAGGTCCCCAAAGCCCAGAAGGCCTCCGCCAACCCACTCACCAAGCCCATCCTATACCTCGTTTTCGAGTACCTTGACACTGACCTCAAGAAGTTCATCGATTCCCACCGTAAGGGACCTAACCCTAGGCCACTCCCTCCCCAACTCGTTCAGAGCTTTCTCTTCCAGCTATGCAAGGGCGTGGCGCACTGTCACAGCCACGGAGTCCTGCATCGCGATCTCAAGCCCCAGAACCTTCTCCTCGACCAGCAGAAGGGGATTCTCAAGATCGCTGATCTGGGCCTCGGGCGTGCCTTCACGGTCCCTCTCAAGAGCTACACGCATGAGATTGTTACTCTGTGGTACAGAGCGCCCGAGGTTCTCCTTGGCTCCACGCATTACTCCACTGGGGTTGATATTTGGTCTGTTGGCTGCATCTTTGCTGAAATGGTGAAAAGGCAAGCGCTTTTTCCTGGGGATTCTGAGTTCCAGCAGCTAATTCACATATTCAAGATGTTGGGGACTCCAACGGAGGAGCAATGGCCAGGAGTTACTTCTCTGCGCGATTGGCATGTGTACCCGCGGTGGGAACCTCAGAGTTTGGCAAGGAATGTACCTACCTTAGGACCCGATGGAGTGGACCTGTTGTCGAAAATGCTCAAGTACAACCCTTCTGAGAGAATATCTGCCAAGGCAGCACTTGATCATCCCTACTTTGACAGTCTCGACAAGTCTCAATTTTAG 945 0.5302 MEKYEKLEKVGEGTYGKVYKAREKASGNVVALKKTRLEMDEEGVPPTALREVSLLQLLSQSIYIVRLLSVEHVDKVPKAQKASANPLTKPILYLVFEYLDTDLKKFIDSHRKGPNPRPLPPQLVQSFLFQLCKGVAHCHSHGVLHRDLKPQNLLLDQQKGILKIADLGLGRAFTVPLKSYTHEIVTLWYRAPEVLLGSTHYSTGVDIWSVGCIFAEMVKRQALFPGDSEFQQLIHIFKMLGTPTEEQWPGVTSLRDWHVYPRWEPQSLARNVPTLGPDGVDLLSKMLKYNPSERISAKAALDHPYFDSLDKSQF 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8704g00002 314 PANTHER CELL DIVISION PROTEIN KINASE 1 306 - -
Vium8704g00002 314 ProSiteProfiles Protein kinase domain profile. 4 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8704g00002 314 SMART serkin_6 4 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8704g00002 314 Gene3D Transferase(Phosphotransferase) domain 1 102 313 - -
Vium8704g00002 314 Pfam Protein kinase domain 4 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8704g00002 314 Gene3D Phosphorylase Kinase; domain 1 1 100 - -
Vium8704g00002 314 FunFam Cyclin-dependent kinase B2,2 1 100 - -
Vium8704g00002 314 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vium8704g00002 314 SUPERFAMILY Protein kinase-like (PK-like) 1 309 IPR011009 -
Vium8704g00002 314 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Vium8704g00002 314 FunFam Cyclin-dependent kinase 2 102 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8704g00002 Vium-Chr8704 18204 21741 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8704g00002 1 314 Core Cell Cycle Gene Families AT3G54180 81.529 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Vium8704g00002 Pkinase 1.6e-65 CL0016