Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8704g00001 ATGGCCAGAAAATCGCAGAAAACCCTCAAGAACACTGACACCAACAACAACACTGCAAAACGCACACGCAAAACCGTTCCGAGAGACTCACCACCACAACGAAGTTCAATCTATAGGGGTGTCACAAGACATCGTTGGACTGGTCGGTATGAGGCTCATCTCTGGGACAAAAACTGTTGGAATGAATCGCAGAGCAAGAAAGGAAGACAAGTGTATCTAGGGGCGTATGATGATGAAGAAGCCGCAGCACGTGCTTATGATTTGGCAGCATTGAAGTACTGGGGCCAAGATACCATTCTCAATTTTCCATTAACAAATTATGAGGAGAAGCTGAAGGAAATGGAGGGTCAATCGAAAGAAGAATACATTGGATCCTTGAGAAGAAAAAGCAGTGGATTTTCTCGAGGAGTTTCAAAATACCGAGGTGTAGCAAGACACCACCATAATGGAAGATGGGAAGCTCGAATTGGAAGGGTCTTCGGCAACAAATACCTATATCTTGGAACATATGGTAATTTTCTTAGACTATGA 531 0.4369 MARKSQKTLKNTDTNNNTAKRTRKTVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQDTILNFPLTNYEEKLKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYGNFLRL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8704g00001 176 ProSiteProfiles AP2/ERF domain profile. 139 176 IPR001471 GO:0003700|GO:0006355
Vium8704g00001 176 MobiDBLite consensus disorder prediction 1 37 - -
Vium8704g00001 176 MobiDBLite consensus disorder prediction 7 21 - -
Vium8704g00001 176 SMART rav1_2 37 109 IPR001471 GO:0003700|GO:0006355
Vium8704g00001 176 FunFam AP2-like ethylene-responsive transcription factor 36 105 - -
Vium8704g00001 176 ProSiteProfiles AP2/ERF domain profile. 37 103 IPR001471 GO:0003700|GO:0006355
Vium8704g00001 176 Pfam AP2 domain 138 172 IPR001471 GO:0003700|GO:0006355
Vium8704g00001 176 Pfam AP2 domain 37 95 IPR001471 GO:0003700|GO:0006355
Vium8704g00001 176 PRINTS Ethylene responsive element binding protein signature 85 105 IPR001471 GO:0003700|GO:0006355
Vium8704g00001 176 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Vium8704g00001 176 Gene3D AP2/ERF domain 37 105 IPR036955 GO:0003700|GO:0006355
Vium8704g00001 176 Gene3D AP2/ERF domain 138 173 IPR036955 GO:0003700|GO:0006355
Vium8704g00001 176 SUPERFAMILY DNA-binding domain 138 172 IPR016177 GO:0003677
Vium8704g00001 176 SUPERFAMILY DNA-binding domain 36 104 IPR016177 GO:0003677
Vium8704g00001 176 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 11 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8704g00001 Vium-Chr8704 1042 3041 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8704g00001 33 170 AP2-EREBP Transcription Factor Family AT5G57390 72.464 5.67e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vium8704g00001 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8704g00001 K09285 - gmx:100819898 316.235