Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8697g00001 ATGCAAGTCGTTGTGCGGTTCTATAGTTTCCTTCTTTACCTTAACATGAATCAAAACCAGCTTCAGCCTCTGCCTCTGCTTAGTAGCTTCCTAGGTTCCTCTCCCGAAGAAGCTTTGCTACAAAACCAAAATTCTAAACCACATCATGGTCAAGTTGAGGATGTCACTGTGGCCTTACACATAGGCCTCCCCAACAATTCAAGTGGTGGTTCCACCAATGATCATGGATTTGTGAATGCCACAACTCATGCTCCTAGCAACTACTGGATACCAACTCAAGAACAAATCCTTGTTGGGTTTAGCCATTTCTCTTGTCCCGTCTGCTGCAAAACCTTCAATCGCCACAACAATCTTCAGATGCATATGTGGGGGCACGGGTCACAGTATCGGAGAGGGCCAGACTCGCTGAAGCGAACCCATCCACGACCGTTGTTGGACATTCCCTGCTACTGTTGCGCGAGAGGGTGCAAGAACAACATCGAGCACCCACGTGCGAAGCCTCTGAAGGACTTTCGCACGCTTCAGACGCACTTCAAGAGGAAGCATGGCTCCAAACCCTTCACGTGCCGCAAGTGCGCGAAGCCTTTGGCCGTGAAAGGTGACTGGCGAACCCACGAGAAAAACTGCGGCAAACGCTGGCTCTGCATTTGTGGCTCCGACTTCAAACATAAGAGGTCCCTCAAAGACCACATGAAAGCCTTTGGCTTTGGTCACACCCCTTTCACTTCTTCTTCTGATGCCATGTAG 747 0.4993 MQVVVRFYSFLLYLNMNQNQLQPLPLLSSFLGSSPEEALLQNQNSKPHHGQVEDVTVALHIGLPNNSSGGSTNDHGFVNATTHAPSNYWIPTQEQILVGFSHFSCPVCCKTFNRHNNLQMHMWGHGSQYRRGPDSLKRTHPRPLLDIPCYCCARGCKNNIEHPRAKPLKDFRTLQTHFKRKHGSKPFTCRKCAKPLAVKGDWRTHEKNCGKRWLCICGSDFKHKRSLKDHMKAFGFGHTPFTSSSDAM 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8697g00001 248 Pfam Zinc-finger of C2H2 type 103 122 - -
Vium8697g00001 248 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
Vium8697g00001 248 Gene3D Classic Zinc Finger 102 125 - -
Vium8697g00001 248 FunFam Zinc finger protein WIP2 156 238 - -
Vium8697g00001 248 SUPERFAMILY beta-beta-alpha zinc fingers 98 125 IPR036236 -
Vium8697g00001 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Vium8697g00001 248 PANTHER ZINC FINGER PROTEIN WIP2 24 242 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8697g00001 Vium-Chr8697 576 5219 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8697g00001 7 243 C2H2 Transcription Factor Family AT1G34790 56.439 1.25e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium8697g00001 zf-met 0.00059 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8697g00001 - - var:108336851 488.034