Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8694g00001 ATGGCTCAGTCGCGTTCCGCCGCCGGCGCATGCAAGGGTGCCACGGCGGAGTTCCCGGCGGGGCTAAGGGTTTTGGTCGTCGACGATGACGCCACCACGCTGAGGATTATAGAGCAAATGTCAATTCGATGCCGTTACCGCGTTACCACGTGCACTGAGGCTACTGTGGCTTTGAATCTTCTGCGGGAAAGGAAAGGTTGTTTTGATGTGGTACTGAGTGATGTTCATATGCCAGACATGGATGGCTATAAGCTCCTTGAACATGTTGGGCTGGAAATGGACCTTCCTGTAATTATGATGTCTGGTGATAGTACAACAAGTGCTGTTATGAAGGGAATTAGACATGGGGCTTGTGATTATTTGATTAAGCCTGTACGTGAGGAAGAACTGAGGAATATATGGCAACATGTTGTTAGGAAAATCTGGAATGAAAATAAAGAACATGATAATTCTGGCAGCATGGAAGATAGTGATTGGAATAAACGGGGAAATGATGATACTGAATATACTTCTTCTGTTGCTGATGCAGCAGAAGTAGTTAAAGCACCAAAAAAGAGGAGCAGTTTAAAAGAAGAAGATATTGAATTGGAGAGTGATGATCCAGCCACATCTAAGAAGCCTCGCGTAGTGTGGTCAGTAGAACTGCACCAACAATTTGTCAGTGCTGTGAATCAACTTGGGCTTGATAAGGCTGTGCCAAAGAGAATTCTTGAATTGATGAATGTCCCTGGTTTGACTAGAGAAAATGTTGCCAGTCATTTGCAGAAATTTAGACTTTACTTGAAGCGATTAAGTGGAGTGGCACAGCAACAGAATGGGATGCTAAATGCAGTTCCTGGGACTATAGAATCCAAGCTGAGCGCTACTGGAAGATTTGACATACAAGCTTTGGCTGCTGCTGGCCATATTCCGCCTGAAACACTTGCAGCCCTTCATGCTGAGCTCTTAGGTCGCCCTGCAACTAACATATTGTCTACAGCGGACCAGGCCACATTGCTGCAAGCATCCATTGGGCTAAAACATTCCCATGCTGAACATGCTGTGGCGTATGGTCAGCCTTTTGTAAAGTGTCCTTCCAACATTGGCAAGGATTTTTCTCCCTCTTTCTTAACTGCAAATGACATGTCGTCAGGATATGGTGCATGGCCATCATCTAATAATACAATGGGTTCAGTGAGACCCAATAATAGCGATGAAAGAGTGGGTACTCAGTATAATAACATACTGATGGATATATTAGATCACCAACAAAGGCAGCAACCCCAGCAAAAACAACAGCAGCACCAGCAGCAAAAGCAACAACAACAACAGCCTCTGATACATGATCAGAGTTGTTCAATCAATGTTCAACCATCTTGCTTGGTGGTTCCATCTCAATCCTGTGACACTCTACAGAAATCAAATAATTCAGTTAGTGCATCTCAATTTTCCGGTGGGGACACAAAAGCTCGAGCTGTTCTCTATGCTCATACTATGCCCTCCACTTGTTCTATGAGCTCCATTAATGGCAGTATTCAGCAGCTTCAAAACTCTACTTTGACATTTGGTGGTGCAAGACCTTTGCCTAGCCCTTTGCCCATGTCTGATAGACAAGATCCCTATGGTTTGAAACCAGGTGATTCATTTGATCAAGTGTGCCTTAGGAATATTGGGTTTATTGGTAAAGGTACCTGTATTCCAAATAGGTTTGTTCAAAATGAAATTGAATCATCTGTCAGTGATTTTAGTCAAATGAAAGTCAATGTAGATAGCACTGGCAACGCACTGAAGGAGGAGCCAAATTTTATAAGTATGCAAAAAGTGAGTCGCCCAATCGTTGAAAGATATCAATCTTGTGATCATTCAAGTGTGTTTACTGAATAG 1863 0.4332 MAQSRSAAGACKGATAEFPAGLRVLVVDDDATTLRIIEQMSIRCRYRVTTCTEATVALNLLRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSGDSTTSAVMKGIRHGACDYLIKPVREEELRNIWQHVVRKIWNENKEHDNSGSMEDSDWNKRGNDDTEYTSSVADAAEVVKAPKKRSSLKEEDIELESDDPATSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQNGMLNAVPGTIESKLSATGRFDIQALAAAGHIPPETLAALHAELLGRPATNILSTADQATLLQASIGLKHSHAEHAVAYGQPFVKCPSNIGKDFSPSFLTANDMSSGYGAWPSSNNTMGSVRPNNSDERVGTQYNNILMDILDHQQRQQPQQKQQQHQQQKQQQQQPLIHDQSCSINVQPSCLVVPSQSCDTLQKSNNSVSASQFSGGDTKARAVLYAHTMPSTCSMSSINGSIQQLQNSTLTFGGARPLPSPLPMSDRQDPYGLKPGDSFDQVCLRNIGFIGKGTCIPNRFVQNEIESSVSDFSQMKVNVDSTGNALKEEPNFISMQKVSRPIVERYQSCDHSSVFTE 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8694g00001 620 ProSiteProfiles Response regulatory domain profile. 23 138 IPR001789 GO:0000160
Vium8694g00001 620 SUPERFAMILY CheY-like 21 145 IPR011006 -
Vium8694g00001 620 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 262 IPR017930 -
Vium8694g00001 620 CDD REC_typeB_ARR-like 24 138 - -
Vium8694g00001 620 Pfam Myb-like DNA-binding domain 208 256 IPR001005 -
Vium8694g00001 620 FunFam Two-component response regulator 202 265 - -
Vium8694g00001 620 SMART REC_2 22 134 IPR001789 GO:0000160
Vium8694g00001 620 Pfam Response regulator receiver domain 24 133 IPR001789 GO:0000160
Vium8694g00001 620 SUPERFAMILY Homeodomain-like 203 263 IPR009057 -
Vium8694g00001 620 MobiDBLite consensus disorder prediction 416 439 - -
Vium8694g00001 620 MobiDBLite consensus disorder prediction 381 400 - -
Vium8694g00001 620 MobiDBLite consensus disorder prediction 147 165 - -
Vium8694g00001 620 Gene3D - 202 265 - -
Vium8694g00001 620 MobiDBLite consensus disorder prediction 147 202 - -
Vium8694g00001 620 MobiDBLite consensus disorder prediction 179 202 - -
Vium8694g00001 620 FunFam Two-component response regulator 22 159 - -
Vium8694g00001 620 Gene3D - 22 156 - -
Vium8694g00001 620 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 259 IPR006447 GO:0003677
Vium8694g00001 620 PIRSF RR_ARR_type-B 1 616 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vium8694g00001 620 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 423 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8694g00001 Vium-Chr8694 2196 8870 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8694g00001 56 320 Response Regulator Gene Family AT3G16857 54.671 9.49e-92 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vium8694g00001 Response_reg 1.6e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8694g00001 - K14491 pvu:PHAVU_003G0170001 1004.59