Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8693g00006 ATGGGTTCTCACCAAAACGAACCATGGCTACTGGAGAACGGAAACCCGAAGGTCTTGACCAGGGAAATGAGACATGGTCGCACTGCGCATAGCAAGTCTTCCAACTCACTTCGCAAGAAGTCTGATCGCACTCTTGTTTCTAAGGTTCCCTGTGCCACTATCCGAAACATGCTTTTCAACTTGCAAGAGGTTATTCTTGGCACCAAGCTTTCCATTCTCATCCCTGCCATTCCTGCTGCCATTGTTGCTGAGTACTGTGGCTTTGGAAGACCTTGGGTTTTCTTGTTGAGCTTGCTTGGACTCACCCCACTTGCTGAACGTGTGAGCTTCATAACCGAACAAGTTGCCTTCTACACTGGTCCTACAGTTGGAGGACTTCTGAACGCGACGTGTGGGAATGTTACGGAGCTCATAATAGCAATATTTGCGCTTAGCAGTAACAAAATTGCTGTGGTCAAGTATTCTCTGTTGGGTTCTATTCTTTCAAACCTTCTTCTGGTTCTTGGCACCTCTCTATTATGTGGTGGCATTGCAAACCTTAGAGTGGAACAAAAATACGATAGAAGACAAGGAGATGTGAACTCACTTATGCTGCTGTTGGCATTGTTGTGCTACTTACTTCCAATGCTGTTCAAATATAGCGCTGCCTCAGCTGCTCTCACTGTTGATCCTTCACTCCACTTGTCTAGAGCTTCTAGCATTGTGATGCTGATTGCATATGTTGTTTACATAATCTTTCAACTGTGGACACACAGGCAACTATTTGAAGCTGAAGATGAGGATGAAGATGACAGCAATGGTTCAGATGAACAAGCCGTCATTGGACTCTGGAGTGGCATTGCTTGGCTGATTGGGATGACTGTGTTCATTGCTCTGTTGTCTGAATACGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTTTGTCTGTGAGCTTCCTCAGCATAATCTTGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCAGTCATATTTGCTTTCAAGAACAAGCTGGACATCTCATTGGGTGTTGCATTGGGTTCAGCAACTCAGATTGCCATGTTTGTGGTCCCTTTGTGTGTGATCGTTGCTTGGACTATGGGTGTCAAAATGGATTTGAACTTCAACATCCTAGAGACAGGTTCCGTTGCTTTGGCAATAATAGTCACAAGCTTTACTTTACAGGATGGTACTTCTCACTACTTGAAAGGCCTTGTTCTCCTGCTGTGCTACATAGTTATTGGAGCTTGCTTCTTCGTACAAAGAACACCATTGAACCAAGCTGATGCTACAAACGTCATTCCTAAAGCAGCCATTAATGCAGTTTTAAGTGCTTAG 1347 0.4462 MGSHQNEPWLLENGNPKVLTREMRHGRTAHSKSSNSLRKKSDRTLVSKVPCATIRNMLFNLQEVILGTKLSILIPAIPAAIVAEYCGFGRPWVFLLSLLGLTPLAERVSFITEQVAFYTGPTVGGLLNATCGNVTELIIAIFALSSNKIAVVKYSLLGSILSNLLLVLGTSLLCGGIANLRVEQKYDRRQGDVNSLMLLLALLCYLLPMLFKYSAASAALTVDPSLHLSRASSIVMLIAYVVYIIFQLWTHRQLFEAEDEDEDDSNGSDEQAVIGLWSGIAWLIGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAVIFAFKNKLDISLGVALGSATQIAMFVVPLCVIVAWTMGVKMDLNFNILETGSVALAIIVTSFTLQDGTSHYLKGLVLLLCYIVIGACFFVQRTPLNQADATNVIPKAAINAVLSA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8693g00006 448 NCBIfam calcium/proton exchanger 56 422 - -
Vium8693g00006 448 NCBIfam calcium/proton exchanger 74 422 IPR004798 GO:0006816|GO:0015369
Vium8693g00006 448 Gene3D - 121 276 IPR044880 -
Vium8693g00006 448 FunFam Vacuolar cation/proton exchanger 121 265 - -
Vium8693g00006 448 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 24 426 IPR004713 GO:0006812|GO:0008324|GO:0016020
Vium8693g00006 448 FunFam Vacuolar cation/proton exchanger 267 423 - -
Vium8693g00006 448 Pfam Sodium/calcium exchanger protein 92 249 IPR004837 GO:0016020|GO:0055085
Vium8693g00006 448 Pfam Sodium/calcium exchanger protein 280 417 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8693g00006 Vium-Chr8693 35819 39250 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8693g00006 7 430 Antiporters AT2G38170 69.746 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8693g00006 K07300 - gmx:100816231 733.021