Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8687g00016 ATGTCTCACTTCGGACGCTCGGGTCCTCCTGACATTTCCGACACTTACTCTCTTCTCGTTCTCAACATCACCTTCCGCACCACAGCCGATGACCTATTTCCTCTATTCGACAAGTATGGGAAGGTCGTTGACATCTTCATCCCCAAGGATCGAAGGACTGGTGAGTCCAGGGGTTTTGCCTTTGTGCGTTACAAGTATGCTGATGAGGCTCAAAAGGCCGTTGATAGGCTAGACGGAAGAATGGTTGATGGTCGTGAAATAACTGTCCAGTTTGCGAAATATGGGCCTAATGCTGAGAGGATTCACAAAGGAAGGATTATTGAAACGGCCCAGAGATCAAGGCACCGGTCAAGAAGCCGTAGTCCCAGGAAAAGGTATCGTGATGACAGAGACAGGGACTATAGAAAGAGAAGTCGCAGTAGAAGCTATGATAGGTATGAACGTGACAAGCACCGTGGGAGAGACAAAGATTATCGTCACAGAAGCAGGAGCCGTAGTACCAGTCTTGATTACAAGGGTCGTGGTAGGGCACGCTATGATGATGAGCATCATAGTAGAAGCCGGAGTAGATCAGTTGACAGTCGCTCCCCTGCACGACGCAGTCCTAGTCCTCGAAAGAGTCCTTCCTTACAGCGGAGCACTTCTCCCCAAAGGAGTACTTCCCCTAGGAAAAGCCCAAGGGGTGAAAGTCCAGCAAATCGTAGCCGTGATGGACGTTCTCCACGTTCTCCTTCCCCGCGCAGTGTATCACCACGTGGTCGCCCTGAAGCTTCACGAAGCCCTTCCCCTCGAAATTCGAATGGTGATGAATAA 813 0.5043 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETAQRSRHRSRSRSPRKRYRDDRDRDYRKRSRSRSYDRYERDKHRGRDKDYRHRSRSRSTSLDYKGRGRARYDDEHHSRSRSRSVDSRSPARRSPSPRKSPSLQRSTSPQRSTSPRKSPRGESPANRSRDGRSPRSPSPRSVSPRGRPEASRSPSPRNSNGDE 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8687g00016 270 MobiDBLite consensus disorder prediction 102 270 - -
Vium8687g00016 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Vium8687g00016 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Vium8687g00016 270 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 14 256 - -
Vium8687g00016 270 MobiDBLite consensus disorder prediction 196 228 - -
Vium8687g00016 270 FunFam Serine/arginine-rich splicing factor SC35 4 103 - -
Vium8687g00016 270 SUPERFAMILY RNA-binding domain, RBD 8 100 IPR035979 GO:0003676
Vium8687g00016 270 SMART rrm2_1 17 90 IPR003954 GO:0003676
Vium8687g00016 270 CDD RRM_SRSF2_SRSF8 18 90 - -
Vium8687g00016 270 SMART rrm1_1 17 90 IPR000504 GO:0003723
Vium8687g00016 270 MobiDBLite consensus disorder prediction 124 195 - -
Vium8687g00016 270 Gene3D - 4 105 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8687g00016 Vium-Chr8687 144635 147668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8687g00016 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 5.68e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8687g00016 K12891 - gmx:100778928 374.4