Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8687g00012 ATGGATTCTGCGTTCTCTGTTACCACGACGGCGCACATGGCGATTGTCAGAGCGCTCCACCGTCATTTTGCCGGCGCTCCTCAACGCGCCTTCGTCCGGCGCAACCTCAGATGCCTCATTGCTTCCTACAACAACCGCTGCCGCATTCCATGTTCTTTTACTTCCGCGCCGTCGCCGTCCTCGCTCCGCTGCTTCGGCGGATTGCTCCCGCGAATGCCGTGCCGACTCCGCTGCATTTCGAGCTCCGCCGCTTCCTGTGCTTCTTCCACCGGCGATGGAAATGGAGGCGGTGGAATCGGTGACAGCGGCGGTTCTGGCGGCTCTGGCGGTTCTAGCGGTGAGTCTGGTGATGCTAATCTCCAATTGGTTGGTGACGCGTCACAGGAGCTTTCGGCACTTTCGCCTGACGTTATCATTCTCGATGTTTCAGGAATGGTGTGCGGGGGATGTGCAGCGACTGTGAAAAGGATACTGGAAAATCGAGTATCATCAGCTAGTGTAAATTTAACAACAGAGACAGCAATCGTTTGGCCTATATCTGAAGCAAAGAATGCACCAAATTGGCAAAAGCAATTAGGGGAGGCACTTGCAGAGCATTTAACCAGCTGTGGTTACAATTCTAGCCTCCGAGATTCTACAAGAGACAATTTCCTCCAAATTTTTGAAAGGAAGATGGAGGAAAGACATAGACAATTAAGAGAAAGTGGTCGTGAGCTAGCTGTTTCTTGGGCTCTATGTGCTGTCTGTCTTGTTGGCCATTTCTCTCATTTCTTTGCAGCAAAGGCACCGTGGATCCATGTCTTTCATTCCATTGGGTTTCATCTATCATTATCTTTATTTACATTGCTTGGTCCTGGCCGCCAGCTTATCCTTGATGGTTTAAAAAGCCTTCTTAAAACAACACCAAACATGAACACCTTAGTTGGTCTTGGGGCTTTGTCTTCATTTACTGTCAGCTCATTTGCTGCCTTAGTTCCAAAATTGGGATGGAAGGCTTTCTTTGAGGAGCCAATTATGCTAATTGCATTTGTGTTGCTAGGAAGGAATCTCGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGGCAGGACTTCTTAGTTTGTTGCCACCAAAAGCTCGCCTTCTAGTTAACAATGAGGAAACAGAGGCTGGCTCAGTTGTTGAAGTTCCTTCTGAAAGTCTTTCTATTGGAGACCAAATTATTGTGCTGCCTGGAGACCGTATTCCAGCTGATGGAGTTGTGAGAGCTGGTAGAAGCACTGTAGATGAATCAAGTTTCACTGGTGAACCACTGCCTGTAACAAAAGTGCCTGGGAGTGAGGTAGCAGCTGGTAGTATAAATCTTAACGGAACTCTTACAATGGAAGTGCAACGACCAGGTGGCGAAACTTCTATGGCAGACATTGTTCGTCTGGTTGAAGAGGCACAAAGTAGGGAAGCTCCTGTACAACGGTTGGCTGACAAGGTGGCTGGACATTTCACTTATGGAGTGATGGCAGCCTCTGCTGCTACTTTCACATTCTGGAGTCTGTATGGGGCACACATTTTGCCTTCTGCTTTATATCAAGGAAGTTCAGTTTCACTGGCTTTGCAGCTTGCTTGCAGCGTTCTGGTTGTTGCTTGTCCATGTGCACTTGGGTTAGCCACACCTACTGCAGTGCTGGTTGGAACATCTCTGGGGGCTAAAAGAGGTTTACTTTTACGTGGTGGAAACATTCTAGAGAAGTTTGCAATGGTAAACACTGTTGTGTTTGACAAAACAGGGACCCTCACAGTTGGTAGACCTGTTGTGACAAACATTATCACTGCCCCATGCATGAAAAGTGCTATTTCAAGCCAAACTGAAGAAAATGCTTTGTCTGATATTGAAGTTCTAAGGCTAGCAGCTGCAGTAGAATCGAATTCCATACATCCAGTTGGGAAAGCGATTGTGGATGCTGCTGTGGCTGTTAATTGTCATAATGCTAAGGTAATAGATGGAACATTCCTGGAAGAACCTGGGTCTGGTGCAGTGGCAACAATTGATAACAAAAAGGTTTCTGTTGGTACATTGGAATGGATCACCAGGCATGGAGTTATTGACAGTTTAGATCAAGAAGTGGAGAAATGTAATAATCAATCCTTTGTCTATGTTGGAATTGACGATACTTTAGCTGGCCTAATTTATTTTCAAGATGAGATAAGGGAAGATGCAAGAGACGTTGTTGACAGATTGTCAAAGCAAAATCTTGATATATACATGCTATCAGGAGACAAGAGGAATGCTGCCGAGCATGTTGCTTCTCTTGTTGGAATTCCCAAAGATAAGGTGCTATCTGAAGTGAAACCAGATGAGAAAAAGAAGTTCATAAATGAACTACAGAAAGATAAGAACATTGTTGCTATGGTTGGTGATGGAATTAACGATGCAGCTGCCCTGGCTTCTTCACATGTTGGTATTGCATTAGGTGGAGGTGTCGGGGCTGCTAGTGAGGTGTCTTCTATTGTATTAATGCGCAACCAGCTGTCACAGGTACTTGATGCCTTGGAGCTTAGTAGGTTGACCATGAATACTGTAAAGCAGAATCTTTGGTGGGCTTTCGTCTACAACATTGTAGGAATTCCAATTGCAGCTGGAGTGTTATTTCCCATAAATGGAACTATTCTGACTCCATCAATTGCAGGGGCTCTCATGGGGCTGAGTTCCATTGGTGTAATGACCAACTCGATACTTTTGAGATTCAAATTTTCCTCAAAGCAGAAACAAATATATAGTACATCGCCAAATACCAAAATCCATGTAGATGCTGATCTGGCACAACAAAACCGGAAAACAAGCCGACCATACTAG 2832 0.4527 MDSAFSVTTTAHMAIVRALHRHFAGAPQRAFVRRNLRCLIASYNNRCRIPCSFTSAPSPSSLRCFGGLLPRMPCRLRCISSSAASCASSTGDGNGGGGIGDSGGSGGSGGSSGESGDANLQLVGDASQELSALSPDVIILDVSGMVCGGCAATVKRILENRVSSASVNLTTETAIVWPISEAKNAPNWQKQLGEALAEHLTSCGYNSSLRDSTRDNFLQIFERKMEERHRQLRESGRELAVSWALCAVCLVGHFSHFFAAKAPWIHVFHSIGFHLSLSLFTLLGPGRQLILDGLKSLLKTTPNMNTLVGLGALSSFTVSSFAALVPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMAGLLSLLPPKARLLVNNEETEAGSVVEVPSESLSIGDQIIVLPGDRIPADGVVRAGRSTVDESSFTGEPLPVTKVPGSEVAAGSINLNGTLTMEVQRPGGETSMADIVRLVEEAQSREAPVQRLADKVAGHFTYGVMAASAATFTFWSLYGAHILPSALYQGSSVSLALQLACSVLVVACPCALGLATPTAVLVGTSLGAKRGLLLRGGNILEKFAMVNTVVFDKTGTLTVGRPVVTNIITAPCMKSAISSQTEENALSDIEVLRLAAAVESNSIHPVGKAIVDAAVAVNCHNAKVIDGTFLEEPGSGAVATIDNKKVSVGTLEWITRHGVIDSLDQEVEKCNNQSFVYVGIDDTLAGLIYFQDEIREDARDVVDRLSKQNLDIYMLSGDKRNAAEHVASLVGIPKDKVLSEVKPDEKKKFINELQKDKNIVAMVGDGINDAAALASSHVGIALGGGVGAASEVSSIVLMRNQLSQVLDALELSRLTMNTVKQNLWWAFVYNIVGIPIAAGVLFPINGTILTPSIAGALMGLSSIGVMTNSILLRFKFSSKQKQIYSTSPNTKIHVDADLAQQNRKTSRPY 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8687g00012 943 FunFam Copper-transporting ATPase 1, putative 355 477 - -
Vium8687g00012 943 Pfam Heavy-metal-associated domain 140 205 IPR006121 GO:0046872
Vium8687g00012 943 SUPERFAMILY Calcium ATPase, transmembrane domain M 334 873 IPR023298 -
Vium8687g00012 943 PRINTS P-type cation-transporting ATPase superfamily signature 584 598 - -
Vium8687g00012 943 PRINTS P-type cation-transporting ATPase superfamily signature 820 832 - -
Vium8687g00012 943 PRINTS P-type cation-transporting ATPase superfamily signature 797 816 - -
Vium8687g00012 943 PRINTS P-type cation-transporting ATPase superfamily signature 720 731 - -
Vium8687g00012 943 PRINTS P-type cation-transporting ATPase superfamily signature 742 752 - -
Vium8687g00012 943 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Vium8687g00012 943 Gene3D - 355 477 - -
Vium8687g00012 943 SFLD p-type atpase 567 847 IPR044492 -
Vium8687g00012 943 Gene3D - 575 847 IPR023214 -
Vium8687g00012 943 Gene3D - 137 212 - -
Vium8687g00012 943 NCBIfam heavy metal translocating P-type ATPase 304 906 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vium8687g00012 943 FunFam Copper-transporting ATPase PAA1 chloroplastic 595 728 - -
Vium8687g00012 943 CDD HMA 140 205 IPR006121 GO:0046872
Vium8687g00012 943 NCBIfam copper-translocating P-type ATPase 286 907 - -
Vium8687g00012 943 FunFam Copper-transporting ATPase PAA1, chloroplastic 136 209 - -
Vium8687g00012 943 FunFam Copper-transporting ATPase PAA1 chloroplastic 713 864 - -
Vium8687g00012 943 SUPERFAMILY HMA, heavy metal-associated domain 138 207 IPR036163 GO:0046872
Vium8687g00012 943 PRINTS Copper-transporting ATPase signature 337 356 - -
Vium8687g00012 943 PRINTS Copper-transporting ATPase signature 831 845 - -
Vium8687g00012 943 PRINTS Copper-transporting ATPase signature 774 791 - -
Vium8687g00012 943 PRINTS Copper-transporting ATPase signature 289 308 - -
Vium8687g00012 943 PRINTS Copper-transporting ATPase signature 567 582 - -
Vium8687g00012 943 PANTHER ATP7, ISOFORM B 131 908 - -
Vium8687g00012 943 NCBIfam HAD-IC family P-type ATPase 634 878 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8687g00012 943 NCBIfam HAD-IC family P-type ATPase 342 605 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8687g00012 943 ProSitePatterns E1-E2 ATPases phosphorylation site. 586 592 IPR018303 -
Vium8687g00012 943 Pfam E1-E2 ATPase 368 564 - -
Vium8687g00012 943 SFLD C1.7: P-type atpase like 567 847 - -
Vium8687g00012 943 Gene3D - 595 728 IPR023299 GO:0000166
Vium8687g00012 943 MobiDBLite consensus disorder prediction 90 118 - -
Vium8687g00012 943 SUPERFAMILY Calcium ATPase, transduction domain A 384 473 IPR008250 -
Vium8687g00012 943 Pfam haloacid dehalogenase-like hydrolase 580 809 - -
Vium8687g00012 943 CDD P-type_ATPase_HM 239 903 - -
Vium8687g00012 943 SUPERFAMILY HAD-like 582 903 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8687g00012 Vium-Chr8687 82327 110855 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8687g00012 286 907 Primary Pumps ATPases AT1G63440 39.655 1.19e-125 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8687g00012 K17686 - gmx:100796210 1585.85