Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8687g00011 ATGGATTCTGCGTTCTCTGTTACCACGACGGCGCACATGGCGATTGTCAGAGCGCTCCACCGTCATTTTGCCGGCGCTCCTCAACGCGCCTTCGTCCGGCGCAACCTCAGATGCCTCATTGCTTCCTACAACAACCGCTGCCGCATTCCATGTTCTTTTACTTCCGCGCCGTCGCCGTCCTCGCTCCGCTGCTTCGGCGGATTGCTCCCGCGAATGCCGTGCCGACTCCGCTGCATTTCGAGCTCCGCCGCTTCCTGTGCTTCTTCCACCGGCGATGGAAATGGAGGCGGTGGAATCGGTGACAGCGGCGGTTCTGGCGGCTCTGGCGGTTCTAGCGGTGAGTCTGGTGATGCTAATCTCCAATTGGTTGGTGACGCGTCACAGGAGCTTTCGGCACTTTCGCCTGACGTTATCATTCTCGATGTTTCAGGAATGGTGTGCGGGGGATGTGCAGCGACTGTGAAAAGGATACTGGAAAATCGACCACAGGTATCATCAGCTAGTGTAAATTTAACAACAGAGACAGCAATCGTTTGGCCTATATCTGAAGCAAAGAATGCACCAAATTGGCAAAAGCAATTAGGGGAGGCACTTGCAGAGCATTTAACCAGCTGTGGTTACAATTCTAGCCTCCGAGATTCTACAAGAGACAATTTCCTCCAAATTTTTGAAAGGAAGATGGAGGAAAGACATAGACAATTAAGAGAAAGTGGTCGTGAGCTAGCTGTTTCTTGGGCTCTATGTGCTGTCTGTCTTGTTGGCCATTTCTCTCATTTCTTTGCAGCAAAGGCACCGTGGATCCATGTCTTTCATTCCATTGGGTTTCATCTATCATTATCTTTATTTACATTGCTTGGTCCTGGCCGCCAGCTTATCCTTGATGGTTTAAAAAGCCTTCTTAAAACAACACCAAACATGAACACCTTAGTTGGTCTTGGGGCTTTGTCTTCATTTACTGTCAGCTCATTTGCTGCCTTAGTTCCAAAATTGGGATGGAAGGCTTTCTTTGAGGAGCCAATTATGCTAATTGCATTTGTGTTGCTAGGAAGGAATCTCGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGGCAGGACTTCTTAGTTTGTTGCCACCAAAAGCTCGCCTTCTAGTTAACAATGAGGAAACAGAGGCTGGCTCAGTTGTTGAAGTTCCTTCTGAAAGTCTTTCTATTGGAGACCAAATTATTGTGCTGCCTGGAAGTGAGGTAGCAGCTGGTAGTATAAATCTTAACGGAACTCTTACAATGGAAGTGCAACGACCAGGTGGCGAAACTTCTATGGCAGACATTGTTCGTCTGGTTGAAGAGGCACAAAGTAGGGAAGCTCCTGTACAACGGTTGGCTGACAAGGTGGCTGGACATTTCACTTATGGAGTGATGGCAGCCTCTGCTGCTACTTTCACATTCTGGAGTCTGTATGGGGCACACATTTTGCCTTCTGCTTTATATCAAGGAAGTTCAGTTTCACTGGCTTTGCAGCTTGCTTGCAGCGTTCTGGTTGTTGCTTGTCCATGTGCACTTGGGTTAGCCACACCTACTGCAGTGCTGGTTGGAACATCTCTGGGGGCTAAAAGAGGTTTACTTTTACGTGGTGGAAACATTCTAGAGAAGTTTGCAATGGTAAACACTGTTGTGTTTGACAAAACAGGGACCCTCACAGTTGGTAGACCTGTTGTGACAAACATTATCACTGCCCCATGCATGAAAAGTGCTATTTCAAGCCAAACTGAAGAAAATGCTTTGTCTGATATTGAAGTTCTAAGGCTAGCAGCTGCAGTAGAATCGAATTCCATACATCCAGTTGGGAAAGCGATTGTGGATGCTGCTGTGGCTGTTAATTGTCATAATGCTAAGGTAATAGATGGAACATTCCTGGAAGAACCTGGGTCTGGTGCAGTGGCAACAATTGATAACAAAAAGGTTTCTGTTGGTACATTGGAATGGATCACCAGGCATGGAGTTATTGACAGTTTAGATCAAGAAGTGGAGAAATGTAATAATCAATCCTTTGTCTATGTTGGAATTGACGATACTTTAGCTGGCCTAATTTATTTTCAAGATGAGATAAGGGAAGATGCAAGAGACGTTGTTGACAGATTGTCAAAGCAAAATCTTGATATATACATGCTATCAGGAGACAAGAGGAATGCTGCCGAGCATGTTGCTTCTCTTGTTGGAATTCCCAAAGATAAGGTGCTATCTGAAGTGAAACCAGATGAGAAAAAGAAGTTCATAAATGAACTACAGAAAGATAAGAACATTGTTGCTATGGTTGGTGATGGAATTAACGATGCAGCTGCCCTGGCTTCTTCACATGTTGGTATTGCATTAGGTGGAGGTGTCGGGGCTGCTAGTGAGGTGTCTTCTATTGTATTAATGCGCAACCAGCTGTCACAGGTACTTGATGCCTTGGAGCTTAGTAGGTTGACCATGAATACTGTAAAGCAGAATCTTTGGTGGGCTTTCGTCTACAACATTGTAGGAATTCCAATTGCAGCTGGAGTGTTATTTCCCATAAATGGAACTATTCTGACTCCATCAATTGCAGGGGCTCTCATGGGGCTGAGTTCCATTGGTGTAATGACCAACTCGATACTTTTGAGATTCAAATTTTCCTCAAAGCAGAAACAAATATATAGTACATCGCCAAATACCAAAATCCATGTAGATGCTGATCTGGCACAACAAAACCGGAAAACAAGCCGACCATACTAG 2739 0.452 MDSAFSVTTTAHMAIVRALHRHFAGAPQRAFVRRNLRCLIASYNNRCRIPCSFTSAPSPSSLRCFGGLLPRMPCRLRCISSSAASCASSTGDGNGGGGIGDSGGSGGSGGSSGESGDANLQLVGDASQELSALSPDVIILDVSGMVCGGCAATVKRILENRPQVSSASVNLTTETAIVWPISEAKNAPNWQKQLGEALAEHLTSCGYNSSLRDSTRDNFLQIFERKMEERHRQLRESGRELAVSWALCAVCLVGHFSHFFAAKAPWIHVFHSIGFHLSLSLFTLLGPGRQLILDGLKSLLKTTPNMNTLVGLGALSSFTVSSFAALVPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMAGLLSLLPPKARLLVNNEETEAGSVVEVPSESLSIGDQIIVLPGSEVAAGSINLNGTLTMEVQRPGGETSMADIVRLVEEAQSREAPVQRLADKVAGHFTYGVMAASAATFTFWSLYGAHILPSALYQGSSVSLALQLACSVLVVACPCALGLATPTAVLVGTSLGAKRGLLLRGGNILEKFAMVNTVVFDKTGTLTVGRPVVTNIITAPCMKSAISSQTEENALSDIEVLRLAAAVESNSIHPVGKAIVDAAVAVNCHNAKVIDGTFLEEPGSGAVATIDNKKVSVGTLEWITRHGVIDSLDQEVEKCNNQSFVYVGIDDTLAGLIYFQDEIREDARDVVDRLSKQNLDIYMLSGDKRNAAEHVASLVGIPKDKVLSEVKPDEKKKFINELQKDKNIVAMVGDGINDAAALASSHVGIALGGGVGAASEVSSIVLMRNQLSQVLDALELSRLTMNTVKQNLWWAFVYNIVGIPIAAGVLFPINGTILTPSIAGALMGLSSIGVMTNSILLRFKFSSKQKQIYSTSPNTKIHVDADLAQQNRKTSRPY 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8687g00011 912 Gene3D - 410 446 - -
Vium8687g00011 912 PANTHER ATP7, ISOFORM B 407 877 - -
Vium8687g00011 912 MobiDBLite consensus disorder prediction 105 119 - -
Vium8687g00011 912 SUPERFAMILY HMA, heavy metal-associated domain 138 209 IPR036163 GO:0046872
Vium8687g00011 912 Gene3D - 137 214 - -
Vium8687g00011 912 ProSitePatterns Heavy-metal-associated domain. 142 171 IPR017969 GO:0046872
Vium8687g00011 912 Pfam Heavy-metal-associated domain 140 207 IPR006121 GO:0046872
Vium8687g00011 912 Pfam haloacid dehalogenase-like hydrolase 549 778 - -
Vium8687g00011 912 SFLD p-type atpase 536 816 IPR044492 -
Vium8687g00011 912 SUPERFAMILY Calcium ATPase, transmembrane domain M 336 843 IPR023298 -
Vium8687g00011 912 MobiDBLite consensus disorder prediction 90 119 - -
Vium8687g00011 912 NCBIfam heavy metal translocating P-type ATPase 407 875 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vium8687g00011 912 Gene3D - 337 409 - -
Vium8687g00011 912 PRINTS Copper-transporting ATPase signature 743 760 - -
Vium8687g00011 912 PRINTS Copper-transporting ATPase signature 800 814 - -
Vium8687g00011 912 PRINTS Copper-transporting ATPase signature 339 358 - -
Vium8687g00011 912 PRINTS Copper-transporting ATPase signature 839 853 - -
Vium8687g00011 912 PRINTS Copper-transporting ATPase signature 536 551 - -
Vium8687g00011 912 PRINTS Copper-transporting ATPase signature 291 310 - -
Vium8687g00011 912 Gene3D - 564 697 IPR023299 GO:0000166
Vium8687g00011 912 FunFam Copper-transporting ATPase PAA1 chloroplastic 564 697 - -
Vium8687g00011 912 NCBIfam HAD-IC family P-type ATPase 636 847 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8687g00011 912 Pfam E1-E2 ATPase 408 533 - -
Vium8687g00011 912 SFLD C1.7: P-type atpase like 536 816 - -
Vium8687g00011 912 FunFam Copper-transporting ATPase PAA1, chloroplastic 136 211 - -
Vium8687g00011 912 Gene3D - 544 816 IPR023214 -
Vium8687g00011 912 PRINTS P-type cation-transporting ATPase superfamily signature 689 700 - -
Vium8687g00011 912 PRINTS P-type cation-transporting ATPase superfamily signature 711 721 - -
Vium8687g00011 912 PRINTS P-type cation-transporting ATPase superfamily signature 766 785 - -
Vium8687g00011 912 PRINTS P-type cation-transporting ATPase superfamily signature 789 801 - -
Vium8687g00011 912 PRINTS P-type cation-transporting ATPase superfamily signature 553 567 - -
Vium8687g00011 912 ProSitePatterns E1-E2 ATPases phosphorylation site. 555 561 IPR018303 -
Vium8687g00011 912 ProSiteProfiles Heavy-metal-associated domain profile. 136 210 IPR006121 GO:0046872
Vium8687g00011 912 CDD HMA 140 207 IPR006121 GO:0046872
Vium8687g00011 912 SUPERFAMILY HAD-like 551 872 IPR036412 -
Vium8687g00011 912 FunFam Copper-transporting ATPase PAA1 chloroplastic 682 833 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8687g00011 Vium-Chr8687 82327 110855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8687g00011 288 876 Primary Pumps ATPases AT1G63440 37.461 1.66e-111 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8687g00011 K17686 - gmx:100796210 1518.06