Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8687g00010 ATGGATTCTGCGTTCTCTGTTACCACGACGGCGCACATGGCGATTGTCAGAGCGCTCCACCGTCATTTTGCCGGCGCTCCTCAACGCGCCTTCGTCCGGCGCAACCTCAGATGCCTCATTGCTTCCTACAACAACCGCTGCCGCATTCCATGTTCTTTTACTTCCGCGCCGTCGCCGTCCTCGCTCCGCTGCTTCGGCGGATTGCTCCCGCGAATGCCGTGCCGACTCCGCTGCATTTCGAGCTCCGCCGCTTCCTGTGCTTCTTCCACCGGCGATGGAAATGGAGGCGGTGGAATCGGTGACAGCGGCGGTTCTGGCGGCTCTGGCGGTTCTAGCGGTGAGTCTGGTGATGCTAATCTCCAATTGGTTGGTGACGCGTCACAGGAGCTTTCGGCACTTTCGCCTGACGTTATCATTCTCGATGTTTCAGGAATGGTGTGCGGGGGATGTGCAGCGACTGTGAAAAGGATACTGGAAAATCGACCACAGGTATCATCAGCTAGTGTAAATTTAACAACAGAGACAGCAATCGTTTGGCCTATATCTGAAGCAAAGAATGCACCAAATTGGCAAAAGCAATTAGGGGAGGCACTTGCAGAGCATTTAACCAGCTGTGGTTACAATTCTAGCCTCCGAGATTCTACAAGAGACAATTTCCTCCAAATTTTTGAAAGGAAGATGGAGGAAAGACATAGACAATTAAGAGAAAGTGGTCGTGAGCTAGCTGTTTCTTGGGCTCTATGTGCTGTCTGTCTTGTTGGCCATTTCTCTCATTTCTTTGCAGCAAAGGCACCGTGGATCCATGTCTTTCATTCCATTGGGTTTCATCTATCATTATCTTTATTTACATTGCTTGGTCCTGGCCGCCAGCTTATCCTTGATGGTTTAAAAAGCCTTCTTAAAACAACACCAAACATGAACACCTTAGTTGGTCTTGGGGCTTTGTCTTCATTTACTGTCAGCTCATTTGCTGCCTTAGTTCCAAAATTGGGATGGAAGGCTTTCTTTGAGGAGCCAATTATGCTAATTGCATTTGTGTTGCTAGGAAGGAATCTCGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGGCAGGACTTCTTAGTTTGTTGCCACCAAAAGCTCGCCTTCTAGTTAACAATGAGGAAACAGAGGCTGGCTCAGTTGTTGAAGTTCCTTCTGAAAGTCTTTCTATTGGAGACCAAATTATTGTGCTGCCTGGAGACCGTATTCCAGCTGATGGAGTTGTGAGAGCTGGTAGAAGCACTGTAGATGAATCAAGTTTCACTGGTGAACCACTGCCTGTAACAAAAGTGCCTGGGAGTGAGGTAGCAGCTGGTAGTATAAATCTTAACGGAACTCTTACAATGGAAGTGCAACGACCAGGTGGCGAAACTTCTATGGCAGACATTGTTCGTCTGGTTGAAGAGGCACAAAGTAGGGAAGCTCCTGTACAACGGTTGGCTGACAAGGTGGCTGGACATTTCACTTATGGAGTGATGGCAGCCTCTGCTGCTACTTTCACATTCTGGAGTCTGTATGGGGCACACATTTTGCCTTCTGCTTTATATCAAGGAAGTTCAGTTTCACTGGCTTTGCAGCTTGCTTGCAGCGTTCTGGTTGTTGCTTGTCCATGTGCACTTGGGTTAGCCACACCTACTGCAGTGCTGGTTGGAACATCTCTGGGGGCTAAAAGAGGTTTACTTTTACGTGGTGGAAACATTCTAGAGAAGTTTGCAATGGTAAACACTGTTGTGTTTGACAAAACAGGGACCCTCACAGTTGGTAGACCTGTTGTGACAAACATTATCACTGCCCCATGCATGAAAAGTGCTATTTCAAGCCAAACTGAAGAAAATGCTTTGTCTGATATTGAAGTTCTAAGGCTAGCAGCTGCAGTAGAATCGAATTCCATACATCCAGTTGGGAAAGCGATTGTGGATGCTGCTGTGGCTGTTAATTGTCATAATGCTAAGGTAATAGATGGAACATTCCTGGAAGAACCTGGGTCTGGTGCAGTGGCAACAATTGATAACAAAAAGGTTTCTGTTGGTACATTGGAATGGATCACCAGGCATGGAGTTATTGACAGTTTAGATCAAGAAGTGGAGAAATGTAATAATCAATCCTTTGTCTATGTTGGAATTGACGATACTTTAGCTGGCCTAATTTATTTTCAAGATGAGATAAGGGAAGATGCAAGAGACGTTGTTGACAGATTGTCAAAGCAAAATCTTGATATATACATGCTATCAGGAGACAAGAGGAATGCTGCCGAGCATGTTGCTTCTCTTGTTGGAATTCCCAAAGATAAGGTGCTATCTGAAGTGAAACCAGATGAGAAAAAGAAGTTCATAAATGAACTACAGAAAGATAAGAACATTGTTGCTATGGTTGGTGATGGAATTAACGATGCAGCTGCCCTGGCTTCTTCACATGTTGGTATTGCATTAGGTGGAGGTGTCGGGGCTGCTAGTGAGGTGTCTTCTATTGTATTAATGCGCAACCAGCTGTCACAGGTACTTGATGCCTTGGAGCTTAGTAGGTTGACCATGAATACTGTAAAGCAGAATCTTTGGTGGGCTTTCGTCTACAACATTGTAGGAATTCCAATTGCAGCTGGAGTGTTATTTCCCATAAATGGAACTATTCTGACTCCATCAATTGCAGGGGCTCTCATGGGGCTGAGTTCCATTGGTGTAATGACCAACTCGATACTTTTGAGATTCAAATTTTCCTCAAAGCAGAAACAAATATATAGTACATCGCCAAATACCAAAATCCATGTAGATGCTGATCTGGCACAACAAAACCGGAAAACAAGCCGACCATACTAG 2838 0.4531 MDSAFSVTTTAHMAIVRALHRHFAGAPQRAFVRRNLRCLIASYNNRCRIPCSFTSAPSPSSLRCFGGLLPRMPCRLRCISSSAASCASSTGDGNGGGGIGDSGGSGGSGGSSGESGDANLQLVGDASQELSALSPDVIILDVSGMVCGGCAATVKRILENRPQVSSASVNLTTETAIVWPISEAKNAPNWQKQLGEALAEHLTSCGYNSSLRDSTRDNFLQIFERKMEERHRQLRESGRELAVSWALCAVCLVGHFSHFFAAKAPWIHVFHSIGFHLSLSLFTLLGPGRQLILDGLKSLLKTTPNMNTLVGLGALSSFTVSSFAALVPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMAGLLSLLPPKARLLVNNEETEAGSVVEVPSESLSIGDQIIVLPGDRIPADGVVRAGRSTVDESSFTGEPLPVTKVPGSEVAAGSINLNGTLTMEVQRPGGETSMADIVRLVEEAQSREAPVQRLADKVAGHFTYGVMAASAATFTFWSLYGAHILPSALYQGSSVSLALQLACSVLVVACPCALGLATPTAVLVGTSLGAKRGLLLRGGNILEKFAMVNTVVFDKTGTLTVGRPVVTNIITAPCMKSAISSQTEENALSDIEVLRLAAAVESNSIHPVGKAIVDAAVAVNCHNAKVIDGTFLEEPGSGAVATIDNKKVSVGTLEWITRHGVIDSLDQEVEKCNNQSFVYVGIDDTLAGLIYFQDEIREDARDVVDRLSKQNLDIYMLSGDKRNAAEHVASLVGIPKDKVLSEVKPDEKKKFINELQKDKNIVAMVGDGINDAAALASSHVGIALGGGVGAASEVSSIVLMRNQLSQVLDALELSRLTMNTVKQNLWWAFVYNIVGIPIAAGVLFPINGTILTPSIAGALMGLSSIGVMTNSILLRFKFSSKQKQIYSTSPNTKIHVDADLAQQNRKTSRPY 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8687g00010 945 FunFam Copper-transporting ATPase 1, putative 357 479 - -
Vium8687g00010 945 SFLD Haloacid Dehalogenase 569 849 - -
Vium8687g00010 945 MobiDBLite consensus disorder prediction 105 119 - -
Vium8687g00010 945 Pfam E1-E2 ATPase 370 566 - -
Vium8687g00010 945 Gene3D - 137 214 - -
Vium8687g00010 945 CDD P-type_ATPase_HM 241 905 - -
Vium8687g00010 945 NCBIfam HAD-IC family P-type ATPase 344 607 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8687g00010 945 NCBIfam HAD-IC family P-type ATPase 636 880 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium8687g00010 945 ProSitePatterns E1-E2 ATPases phosphorylation site. 588 594 IPR018303 -
Vium8687g00010 945 Gene3D - 357 479 - -
Vium8687g00010 945 ProSitePatterns Heavy-metal-associated domain. 142 171 IPR017969 GO:0046872
Vium8687g00010 945 FunFam Copper-transporting ATPase PAA1 chloroplastic 597 730 - -
Vium8687g00010 945 Pfam Heavy-metal-associated domain 140 207 IPR006121 GO:0046872
Vium8687g00010 945 MobiDBLite consensus disorder prediction 90 119 - -
Vium8687g00010 945 PANTHER ATP7, ISOFORM B 131 910 - -
Vium8687g00010 945 SUPERFAMILY Calcium ATPase, transmembrane domain M 336 875 IPR023298 -
Vium8687g00010 945 FunFam Copper-transporting ATPase PAA1 chloroplastic 715 866 - -
Vium8687g00010 945 Gene3D - 597 730 IPR023299 GO:0000166
Vium8687g00010 945 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Vium8687g00010 945 PRINTS P-type cation-transporting ATPase superfamily signature 722 733 - -
Vium8687g00010 945 PRINTS P-type cation-transporting ATPase superfamily signature 744 754 - -
Vium8687g00010 945 PRINTS P-type cation-transporting ATPase superfamily signature 586 600 - -
Vium8687g00010 945 PRINTS P-type cation-transporting ATPase superfamily signature 799 818 - -
Vium8687g00010 945 PRINTS P-type cation-transporting ATPase superfamily signature 822 834 - -
Vium8687g00010 945 FunFam Copper-transporting ATPase PAA1, chloroplastic 136 211 - -
Vium8687g00010 945 PRINTS Copper-transporting ATPase signature 569 584 - -
Vium8687g00010 945 PRINTS Copper-transporting ATPase signature 833 847 - -
Vium8687g00010 945 PRINTS Copper-transporting ATPase signature 291 310 - -
Vium8687g00010 945 PRINTS Copper-transporting ATPase signature 339 358 - -
Vium8687g00010 945 PRINTS Copper-transporting ATPase signature 776 793 - -
Vium8687g00010 945 ProSiteProfiles Heavy-metal-associated domain profile. 136 210 IPR006121 GO:0046872
Vium8687g00010 945 CDD HMA 140 207 IPR006121 GO:0046872
Vium8687g00010 945 Gene3D - 577 849 IPR023214 -
Vium8687g00010 945 SUPERFAMILY HMA, heavy metal-associated domain 138 209 IPR036163 GO:0046872
Vium8687g00010 945 SUPERFAMILY Calcium ATPase, transduction domain A 386 475 IPR008250 -
Vium8687g00010 945 NCBIfam heavy metal translocating P-type ATPase 306 908 IPR027256 GO:0006812|GO:0016020|GO:0019829
Vium8687g00010 945 SFLD p-type atpase 569 849 IPR044492 -
Vium8687g00010 945 Pfam haloacid dehalogenase-like hydrolase 582 811 - -
Vium8687g00010 945 NCBIfam copper-translocating P-type ATPase 288 909 - -
Vium8687g00010 945 SUPERFAMILY HAD-like 584 905 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8687g00010 Vium-Chr8687 82327 110855 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8687g00010 288 909 Primary Pumps ATPases AT1G63440 39.655 1.07e-125 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8687g00010 K17686 - gmx:100796210 1595.48