Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8687g00007 ATGGCGGAGCGTGGTTCTTACGGATTGGGACCTCGATTAGATCTTCAGCAATTACAACTCGAAGCCCAGAATAGGTGGTTGCGCCCTGCGGAAATATGTGAAATTCTTTGCAATTATCGGATGTTTCAAATCACTTCAGAACCACCTACCAGGCCACCAAGTGGCTCGCTTTTTCTCTTTGATCGGAAGGTTTTAAGGTACTTCAGAAAAGATGGACATAATTGGAGAAAGAAAAAAGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACAGGATATGATGCATATAGTATTTGTGCACTACTTGGATGTTAAGGTTAACAAAACTAATGTTGGTGGAAAAACATATTCTGGTGAGGCCACATCAGATTCCCAGAAGGGAAGTTCTTTGTCATCTGGCTTTCCTAGAAATTATGGTAGTGTGCCTTCTGGAAGTACAGATTCCATGAGCCCAACCAGCACTCTGACGTCTTTATGTGAAGATGCCGATTCAGAGGATATTCATCAAGCCAGTTCAGGATCACAATCCTATCAGGAATCAAAATGTTTGGGAAATGATTGCCCTATCGATAAGATTGATGCTCGTTCAAATAATTCATATCTTATGCATCCATCTTCAGGTGATCGTGGACAGTTTCCAGTTCCTGGATCAGAATATATCCCACTTATTCAGGGTCATAGAGCACACGACATTGCATCATGGGACAATGCCATGGAGCAGTCTTCAGGAAAGCATACTGCTCCTTCTCTTGTATCATCTACATCCATTCCACCAAGTGCATCAGGAAACATCCTTGAAGAAAACAATGCTGTTCCAGGCAACCTTTTAGGGCATAAAAATGTCCTCATCGAAGAGGAAAGGGTCTCTCAGGCTCTCCACTCAAATTGGCAGATTCCTTTTGGGGACGATACAGGAGAATTACCTAAGTGGAGCCTTACCCAAACATTAGGTTTGGAATTTGGATCTGATTATGGCACTAGTTTACTGGGGGATGTAGCAGGCTCAGAAATTCTTGCTGAGATGTTCACTTTTAATGGTGAGTTAAAAGAGAAGTCTGTGAACCAAAACATCTCAAAGCAATATACAAATACACAGTCTCAACCTGCAACAAAATCCAATTCTGATTATGAAGTGGCTGGTGAAGCAAGTATTAATTATACCTTGACCATGAAGCGTGGATTATTGGATGGAGAGGAGAGCTTAAAGAAGGTTGATAGTTTCTCTAGGTGGATTACTAAAGAATTTGCTGGTGTGGATGATCTGCATACGCAGTCCTCCCCTGGTATTTCATGGAACACAGATGATTGTGGGGATGTGATAGATGATACATCATTAAACCTGTCCCTTTCTCAAGACCAGCTATTTAGCATAAATGATTTTTCACCTAAATGGGCTTATGCTGAATCAGAAATTGAGGTGTTGATTGTTGGAACATTTTTGAAGAGTCAACCTATGGTGACAGCATGTAACTGGTCCTGTATGTTTGGGGAAGTAGAAGTTCCTGCTGAGGTTTTAGCAAATGGAATTCTATGCTGTCAAGCTCCACCTCATAAGATTGGACGGGTTCCCTTCTATGTAACGTGTTCCAATAGGTTTGCCTGTAGTGAAGTTCGGGAATTCGAGTACAGGGAAGGTTTCGACAGAAATATAGATTTTACAGATCTTTTTACCAGTTCAACTGAAATGGTCCTTCATTTGCGACTGGTTGGGTTACTTTCTTTAAATTCAGTGCACACTTCAAATCAAGTGCTTGAGGATGATATGGAGAAAAGAAACTTAATTTTCAAGCTTATTTCACTGAAAGAGGAAGAAGAATATTCAAGTAGAGAAGAGACAACTGTGGAGATTGATGCAACAAAACACAAGTTGAAGGAGCATATGTTTCACAAGCAGGTTAAAGAGATGTTGTACTCTTGGCTTCTTCACAAAGTAACTGAAACTGGTAAAGGGCCTCTTGTATTAAGTGAGGAAGGGCAGGGCGTGTTACATTTAGTTGCTGCTCTTGGTTACGATTGGGCCATAAAACCAATCATAACTGCTGGAGTAAATATCAACTTCCGTGATGTGAGTGGATGGACAGCTCTACATTGGGCTGCATACTGTGGCCGGGAGCGAACAGTTGCAGTCCTTGTGTCCATGGGTGCAGCCACTGCAGCAGTGACAGATCCATGTCCAGAATTTCCTGAAGGTAGAACAGCTTCAGATCTTGCTTCTAGCAATGGCCACAAAGGAATTTCTGGTTTTCTTGCAGAGTCATTATTAACTAGCCATCTTGAATTACTCACAATGGAGGAAAATAAAGATGGTAGGAAAGAAACTTCAGGAATGAAAGCAGTCCAAACAGTTTCAGAGCGAACTGCGACACCTGTGCTTTATGGGGATATACCAGATGTTATCTGCCTTAAGGATTCTCTCAATGCTGTCCGAAATGCTACACAAGCTGCTGATCGAATACATCAAGTATACAGAATGCAGTCATTTCAGAGGAAACAGTTAGCTAAGCCTGATCATGATGATGAATTTGGATTGTCAGATCAACAAACTCTTTCCTTTTTAGCTTCTAGGATGAGCAAATCTGGACAAGGAGAGGGTTTAGCCAGTGCTGCTGCAATACAAATACAGAAAAAGTTTCGGGGTTGGAAGAAGAGAAAAGAATTCTTGATCATTCGTCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTCAGAAAGCAGTATAGAACAATCATATGGTCCGTGGGAATCCTGGAAAAGGTCATATTACGCTGGAGGCGCAAGGGCAGTGGTTTACGTGGATTTCGATCAGATGCTGTGAACAAGGTCATCCCTGACCAACCAATAGAGTCTCCGAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAAAGTGAAGCAAGGTTCCAAAAGGCCCTTTCACGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGGGTGCTAAATGTAGTTGAGGACTTCCGTCAAACCAAGGGAGATAATTTGAATTCGATGAATTCTGAAGAGGCAGTTGATGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGAAAATTTCTTGCCTATAGCTTTCGATTGA 3225 0.418 MAERGSYGLGPRLDLQQLQLEAQNRWLRPAEICEILCNYRMFQITSEPPTRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEQDMMHIVFVHYLDVKVNKTNVGGKTYSGEATSDSQKGSSLSSGFPRNYGSVPSGSTDSMSPTSTLTSLCEDADSEDIHQASSGSQSYQESKCLGNDCPIDKIDARSNNSYLMHPSSGDRGQFPVPGSEYIPLIQGHRAHDIASWDNAMEQSSGKHTAPSLVSSTSIPPSASGNILEENNAVPGNLLGHKNVLIEEERVSQALHSNWQIPFGDDTGELPKWSLTQTLGLEFGSDYGTSLLGDVAGSEILAEMFTFNGELKEKSVNQNISKQYTNTQSQPATKSNSDYEVAGEASINYTLTMKRGLLDGEESLKKVDSFSRWITKEFAGVDDLHTQSSPGISWNTDDCGDVIDDTSLNLSLSQDQLFSINDFSPKWAYAESEIEVLIVGTFLKSQPMVTACNWSCMFGEVEVPAEVLANGILCCQAPPHKIGRVPFYVTCSNRFACSEVREFEYREGFDRNIDFTDLFTSSTEMVLHLRLVGLLSLNSVHTSNQVLEDDMEKRNLIFKLISLKEEEEYSSREETTVEIDATKHKLKEHMFHKQVKEMLYSWLLHKVTETGKGPLVLSEEGQGVLHLVAALGYDWAIKPIITAGVNINFRDVSGWTALHWAAYCGRERTVAVLVSMGAATAAVTDPCPEFPEGRTASDLASSNGHKGISGFLAESLLTSHLELLTMEENKDGRKETSGMKAVQTVSERTATPVLYGDIPDVICLKDSLNAVRNATQAADRIHQVYRMQSFQRKQLAKPDHDDEFGLSDQQTLSFLASRMSKSGQGEGLASAAAIQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYRTIIWSVGILEKVILRWRRKGSGLRGFRSDAVNKVIPDQPIESPKEDDYDFLKEGRKQSEARFQKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKGDNLNSMNSEEAVDGVEDLIDIDMLLDDENFLPIAFD 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8687g00007 1074 FunFam Calmodulin-binding transcription activator 2 481 577 - -
Vium8687g00007 1074 MobiDBLite consensus disorder prediction 146 187 - -
Vium8687g00007 1074 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Vium8687g00007 1074 ProSiteProfiles Ankyrin repeat region circular profile. 721 746 - -
Vium8687g00007 1074 Gene3D - 656 783 IPR036770 -
Vium8687g00007 1074 SUPERFAMILY E set domains 488 574 IPR014756 -
Vium8687g00007 1074 ProSiteProfiles IQ motif profile. 897 926 IPR000048 GO:0005515
Vium8687g00007 1074 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Vium8687g00007 1074 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1036 - -
Vium8687g00007 1074 Pfam IQ calmodulin-binding motif 899 917 IPR000048 GO:0005515
Vium8687g00007 1074 Pfam IQ calmodulin-binding motif 922 941 IPR000048 GO:0005515
Vium8687g00007 1074 SMART CG_1_2 18 136 IPR005559 GO:0003677
Vium8687g00007 1074 SUPERFAMILY Ankyrin repeat 673 781 IPR036770 -
Vium8687g00007 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 898 947 IPR027417 -
Vium8687g00007 1074 Gene3D Immunoglobulins 481 576 IPR013783 -
Vium8687g00007 1074 ProSiteProfiles IQ motif profile. 920 944 IPR000048 GO:0005515
Vium8687g00007 1074 SMART iq_5 896 918 IPR000048 GO:0005515
Vium8687g00007 1074 SMART iq_5 919 941 IPR000048 GO:0005515
Vium8687g00007 1074 Gene3D - 897 944 - -
Vium8687g00007 1074 SMART ANK_2a 721 750 IPR002110 GO:0005515
Vium8687g00007 1074 SMART ANK_2a 688 717 IPR002110 GO:0005515
Vium8687g00007 1074 ProSiteProfiles Ankyrin repeat profile. 721 753 IPR002110 GO:0005515
Vium8687g00007 1074 FunFam Calmodulin-binding transcription activator 2 896 944 - -
Vium8687g00007 1074 Pfam IPT/TIG domain 488 573 IPR002909 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8687g00007 Vium-Chr8687 47182 57392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8687g00007 1 1055 CAMTA Transcription Factor Family AT5G64220 53.803 0.0 1090
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vium8687g00007 CG-1 3.5e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8687g00007 K21596 - gmx:100795682 1808.11