Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8683g00001 ATGCGAATGAGTTGTAATGGGTGTCGTGTGTTGCGAAAAGGGTGCAGCGAAGATTGTACAATAAGACCGTGTTTGGAATGGATCAAGAACCCAGAATCGCAGGCTAATGCCACCGTTTTTCTTGCTAAGTTCTATGGTCGTGCTGGCCTCATGAATCTCATCAACGCTGGTCCTCAAAACCTTCGACCAGCGATTTTTCGTTCGTTGTTGTACGAGGCATGTGGTCGAATTGTGAACCCAATTTACGGGTCAGTGGGTTTGTTATGGTCGGGGAGCTGGCAGCTGTGTCAAGCCGCCGTGGAAGCCGTTTTGAAAGGCGAGCCGATCACACCAATCACATCGGAAGTGGCGGCGAATGGGCGGGCCCCACCTCTGAAGGCATGCGACATTCGACACGTGTCAAAAGACGAGAAAACGGCGAATCGGACTCAAAAGGCCAAGACTCGAATCCGGGTTAAGCGAACCGGCGGCGACGTTCTTATCAAACCGAAAGCCCCGACGGTGACCGGGTTTGTTCCGGTTGAAGCGGAGACGAACCAGACTACGAGTCATGAATCGGGACTGAGCCACTTGTCGGAAGCTGCAGCCATCGTGGAAGGAGAGAGTAAAGAGAGTGAAAGTGTGGTGTCGGTGGAAACTTGCAACCTATTTGGTGAGACAAAGACGAGTGATCGATTCGGTGCAACTAATGATGAAATTGGTTTGGAATTGAGGCTTGGGTTTGAACCGGTTTCACGTGAGCATCACATGGTTCCAATGAAGAAGAGAAGAATAGAAGTGAAAAGTAGCTGTGACTTAATGGAGTTAGGACTTGAGTCCTCGGCTTGA 828 0.5036 MRMSCNGCRVLRKGCSEDCTIRPCLEWIKNPESQANATVFLAKFYGRAGLMNLINAGPQNLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGEPITPITSEVAANGRAPPLKACDIRHVSKDEKTANRTQKAKTRIRVKRTGGDVLIKPKAPTVTGFVPVEAETNQTTSHESGLSHLSEAAAIVEGESKESESVVSVETCNLFGETKTSDRFGATNDEIGLELRLGFEPVSREHHMVPMKKRRIEVKSSCDLMELGLESSA 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8683g00001 275 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 237 - -
Vium8683g00001 275 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Vium8683g00001 275 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vium8683g00001 275 PIRSF AS2 1 272 IPR017414 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8683g00001 Vium-Chr8683 25659 27367 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8683g00001 1 264 AS2 family AT3G02550 60.073 1.15e-104 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium8683g00001 LOB 6.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8683g00001 - - gmx:100814175 415.616