Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8676g00002 ATGGAGAACTACACAAAAGTGGCAGAAACTTCAATGCCCTTTGCTCGTCGGTATTTGCCACCAAAACCTTTTGAAGCTCTGAAAATGATGAGAGATTTCTCAAAAGAAGTTGCAGATATTACAGATGAACATGGAAGCTTGCTAGATTTCATCGATGATGCAAATAAAGTGGCTGATGCTGAAGAAGATGTCAAAAGGCGTGATAGAATGAAGGAAAGGTTGATGAGGCTGAGAGAAGCAGCTTTTCGCATGGAAGACGTGATTGATGAATATTGCATCCGTGTTAAAGAGAAACAACCTCAACATGGTCCTCCATGGGCAGCTTCACTCTCTAAGACTGTCCACAGCATCAAAACCTTCATCCTTCGACTTCAAATAGCATGTAAGATTCAGGATGAAAAATCAGTTGTTCGTGATGAAAAAGTTGGTTTTGAAAGCCAATATTTTTTAGATAAAAAACTAAACAGTTCTAGAGAAAACAAAAATGTCACGTTTAATCAACTTCGAATGGATCCTCTCTTTATGAAGGAAGAGGAGGTTGTTGGACTTGCTGAACCTACAGAGAGATTGACAGATTGGTTAACAATGGGACGAGAAGAACGCACTGTGATTTCTGTTGTAGGTATTGCAGGAGTTGGAAAAACCACTCTTGCCAAGCATGTTTTTGACAGGGTCCATCAATACTTTGAGTGCCATGCATTGATCACAGTCTCTCAATCCTACACTGTAGAAGAATTGTTGAGGGATTTGGTACGCAAACTTTGCAAAGAGAGAAAGGAAGATCCACCTTGTAAAATTTCTACGATGGATAGAGGCTCCTTGATTGAAGAAGTCAGAGATCGCCTGCACAATAAGAGGTATGTTGTCTTATTTGATGACGTATGGAATGAAAAGTTTTGGGATGACATTCAATCTGCTTTGATCGATGATAAAAACAACAGTAGGATAATAATCACTACAAGGAACGAGAAGGTTGCGGTCTTCTGTAAGAAATCTTCTTTTGTTGAAGTGCATAAGCTAGAAGAGCCATTAAAAGATGAATCTTTCAGATTGTTCTGTAGAAAGGCATTTAAGTATGGTTCTGCCGGAGGCTGCCCAGAAGAACTCAAAGACATATCTCTTGAAATTGTTAGGAAGTGTAAAGGTTTACCTCTGGCAATTGTGGCCATTGGTGGTGTCTTGTCCCAAAAAGATGACAGTGAAAAAGAATGGAGACTGTTTAGTCAAAATCTAAGTTCAGAGTTGAAGAGGAATCCTGATTTAAATATTATAACAAAAATTATAGGTTTAAGTTATGATAATTTGCCGAGCCATCTCAGATTATGTTTACTGTATTTCGGAATGTATCCAAAAGATTATGAAATTGAATCTGAGAGATTGGTTAGGCAATGGGTGGCTGAAGGATTTGTTACCCACGAAGAGGGAAAAACTTTAGAAGAAGTTGCACATGAATATTTACTAGGGTTGGTTCGTAGAAGTTTGGTGCAAGTGTCATCATTTTCCATGAAAGGAAAAGTGAAAAAATGTCGTGTTCATGACTTAATACACGATATGATCCGTACAAAAGTGAAGGATACATGTTTTGGAGAGTATATTGGCGGAGGGCATGATCAATCTGAGTCAAGTGAGTCGGTTCGACGTCTGACAATTCAAGCAAACAATGATTTAAATAGACGTATTAAAAGATCACACATTCGGTCAATTATAGTCATTCCAGGAAAAAAAGAACTATTGTCTGTCCACTTGGTAAAGAAAATCCCTAAAGATTATATTCTATTGAAGGTACTTGATTTTGAAGATTGTGGATTACTTTGTGTTCCTAAAAAGTTGGGGAATTTAATCTACCTGAGGTATTTAAGCTTTAGGGGGACGCAGATAAAAGTTCTTCCAAAATCCATTGGTAAGCTCGTGAACTTGGAGACCTTGGATATACGACAAACGCAAGTGTGTAAGGTGCCGAAGGAGATCAAAAAGCTTAGAAAGTTACGGCATCTTCTGACACCTGACTCTGTATCTTCTTCAATTGAATGGAAGGATATTGGAGGCATGACAAGGCTGCAAAAGATACCACAAGTGCGTATGGAGGGTGATGGAGTGGCCATTAGAGAGGTAGGGAAGTTAAAGCAGTTAAGGGTTCTGAGGGTGCTTTGTTTCGGCGGAGAGCACATTACTTTACTTTTCTCCTCAATCAATGAGATGGAACACTTGCAAGCACTACGCATTGAAAAATCTGATGATCGCAACGTAGTTGACTTGACCACTACGTCAACCATATCTGAACTTAGGAAGCTTTTCCTTGATTTGAAGTTAGAAAAGTTGCCAAATTGGATTCCCCAACTCCTTCATCTTGAGAGATTGACCTTGCGCCACTCTGACTTAAACAATGATCCCTTGGAATCACTAAAAGATATGCCTAGTTTGTTGGTTCTCTCTTTATCCCACGCTTATGAAGGTCAAACTTTGCATTTTCAGCCTGGAGGGTTCAAGAAACTAAGAAAGCTAAATCTCGAACATCTTTGGAACTTGAATTCGATCCTTATGGATGAGACAGCTCTGCAGTCTTTGGAACATCTTAATTTGAAAGGCCTCGATGAACTCAGAACTGTCCCCGATGGCATTCAACATCTGAAGAAACTTAAATTTGTTCTTGTCCTTTCTATGCCAACTCTATTTGTTAAGGAAATTGATCGCATTGGTAAAGACCAGCACTGGAGCATCAATTATGGCTGTATGTGA 2736 0.3907 MENYTKVAETSMPFARRYLPPKPFEALKMMRDFSKEVADITDEHGSLLDFIDDANKVADAEEDVKRRDRMKERLMRLREAAFRMEDVIDEYCIRVKEKQPQHGPPWAASLSKTVHSIKTFILRLQIACKIQDEKSVVRDEKVGFESQYFLDKKLNSSRENKNVTFNQLRMDPLFMKEEEVVGLAEPTERLTDWLTMGREERTVISVVGIAGVGKTTLAKHVFDRVHQYFECHALITVSQSYTVEELLRDLVRKLCKERKEDPPCKISTMDRGSLIEEVRDRLHNKRYVVLFDDVWNEKFWDDIQSALIDDKNNSRIIITTRNEKVAVFCKKSSFVEVHKLEEPLKDESFRLFCRKAFKYGSAGGCPEELKDISLEIVRKCKGLPLAIVAIGGVLSQKDDSEKEWRLFSQNLSSELKRNPDLNIITKIIGLSYDNLPSHLRLCLLYFGMYPKDYEIESERLVRQWVAEGFVTHEEGKTLEEVAHEYLLGLVRRSLVQVSSFSMKGKVKKCRVHDLIHDMIRTKVKDTCFGEYIGGGHDQSESSESVRRLTIQANNDLNRRIKRSHIRSIIVIPGKKELLSVHLVKKIPKDYILLKVLDFEDCGLLCVPKKLGNLIYLRYLSFRGTQIKVLPKSIGKLVNLETLDIRQTQVCKVPKEIKKLRKLRHLLTPDSVSSSIEWKDIGGMTRLQKIPQVRMEGDGVAIREVGKLKQLRVLRVLCFGGEHITLLFSSINEMEHLQALRIEKSDDRNVVDLTTTSTISELRKLFLDLKLEKLPNWIPQLLHLERLTLRHSDLNNDPLESLKDMPSLLVLSLSHAYEGQTLHFQPGGFKKLRKLNLEHLWNLNSILMDETALQSLEHLNLKGLDELRTVPDGIQHLKKLKFVLVLSMPTLFVKEIDRIGKDQHWSINYGCM 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8676g00002 911 Pfam Rx N-terminal domain 28 105 IPR041118 -
Vium8676g00002 911 FunFam Probable disease resistance protein At1g63360 432 521 - -
Vium8676g00002 911 FunFam Probable disease resistance protein At1g61300 164 333 - -
Vium8676g00002 911 Gene3D - 432 523 IPR036388 -
Vium8676g00002 911 PANTHER DISEASE RESISTANCE PROTEIN RP 72 846 IPR044974 GO:0006952
Vium8676g00002 911 Gene3D - 167 337 IPR027417 -
Vium8676g00002 911 Gene3D - 344 431 IPR042197 -
Vium8676g00002 911 Coils Coil 60 80 - -
Vium8676g00002 911 Gene3D Ribonuclease Inhibitor 701 894 IPR032675 -
Vium8676g00002 911 Gene3D - 23 127 - -
Vium8676g00002 911 SUPERFAMILY L domain-like 510 891 - -
Vium8676g00002 911 Gene3D Ribonuclease Inhibitor 578 692 IPR032675 -
Vium8676g00002 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 446 IPR027417 -
Vium8676g00002 911 PRINTS Disease resistance protein signature 380 394 - -
Vium8676g00002 911 PRINTS Disease resistance protein signature 281 295 - -
Vium8676g00002 911 PRINTS Disease resistance protein signature 203 218 - -
Vium8676g00002 911 PRINTS Disease resistance protein signature 850 866 - -
Vium8676g00002 911 Pfam NB-ARC domain 187 434 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8676g00002 Vium-Chr8676 14614 17936 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8676g00002 204 911 WRKY Transcription Factor Family AT5G45050 23.984 2.47e-15 79.0