Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8676g00001 ATGGAAGAGGAAGCGTTAGAGGTTGGTAAATGTATTCTGAAATTACTTTGGGAAGCCTTCAAAAGGATGAAAGATCTCCCAAAAGTAGTTGACGAGATTCAAACTGAACTTGACGAGTTGAAAAACTTAATCAATTTGGAGGAGCAAAGGTTGATGAAGGAGAGAAAAACAGCATTTCTCGCGGAAGATGTGATTGACGAGTTCGAGACACGTATTAAAGAAAAGCAACCTCAAGATGATCGTGGATGGGCAGCGTTCCCCGCTAAGGCTGTTTACCACATCCAAACTCTCATCCCTCGATTTCTAATATCATATAAGGTTAATGATATTTTATCAGATGTTCGTAACACAAAGGAGCGTTTACAAAGAAATCGTCCACAATCAACACAAAACAACAACAATGTCACATTTCATCATTGTCGAATGGATCCTCTCTTTATGGAGGAAGAGGAGGTTGTTGGACTTGCTGGACCTACAAAGATATTGACAGATTGGTTAGAAAATGGACAAAGGGAACGCACTGTGATTTTTGTTGTGGGTGTTGCAGGAGTTGGAAAAACCACTCTTGCCAAGCATGTTTATGACAAGGTCATCTGTAGCAACTTTGTTCACCATGAATTCTTCACAGTGTCTCAGTCCAACACTGTAGAAGAATTTTTGGGGGTTATGTACAGGCATTTCATGAAAAGCGAGCCACCTTCCGATTATTCTATTTTGAAAAATGAAGTCAGAGGTTACTTGCGTGGGAAGAGGTATGTTCTCTTGTTTGATGATGTATGGGAGGACAAATTTTGGGAAACAATTGAAACGGCTTTGATTAAAAATGAAAATAAAAGTAGGATAATAATCACAACAAGGAAAAAGAGTGTTGCGAAATCTTTTACGAATTCTACTCTTTTTAAAAAATACAATCTTGAAGAACCTTTAACTGAAGAAGAATGTTTGAGGTTGCTCCATAAGAAGGCAGGTTATAGTTCTGATTGTCCAGAAGAACTTAAAGATATATCTCTTGAAATTGTTAGCAAGTGTAGTGCTTTACCTCTAGCAATCGAGGTCGTTGGACGAGTCTTGTCACAAAAAGATAGAAGTGCACATGAGTGGGGACTGTTTAGTGAAGAGTTGAACTGGAATCTGACGAATCCGACGAATCCTGAATTTAATATTATAGAAAAAGTTATAGGTTTAAGTTATGATAATTTGCCGACCCATCTCAGGTTATGTTTATTGTATTTCGGAATGTATCCGAAACATTATGAAATTAAATCTGGGAGATTGGTTAGGCAATGGGTGGCTGAAGGATTTGTTACCCACGAAGAGAGAAAAACTTTAGAAGAAGTTGCACAGGAATATTTACTAGGGTTGGTCCATACAAGTTTGGTGCAAGTGGCATCATTTTCCATGAAAGGAAAAGTGAAAACATGTCGTGTTCATGACTTAATACACAATATGATCCGTACAAAAGTGAAGCATACATATTTTGGCGAGTATATTGGCGGAGGGCATGATCAATCTAAGTCAAGTGAGTTGGTTCGACGTCTGGCAATTGAAACCAACAATGATTTAAATAGACCAATTGAAAGATCACACATTCGGTCAATTATAAGCATTCCAGGAAAACAAGAAGAATCATGGTCTTCCGATTTGGAAAGGAATGTTCTTAAAGATGACATGCCATTGAAGGTACTTGATTTTGAGGGTTGTGGATTACTTTGTGTTCCTAAAATGTTGGGGAATTTTATCTACCTGAGGTATTTAAGCTTTAGGGGGACGCAGATAACAGTTCTTCCAAAATCCATAGGTAAGCTCGTGAACTTGGAGACCTTGGATATACGACAAACGCAAGTGCTTGAGTTGCCGAAGGAGATCACAAAGCTCAGAAAGTTACTGCATCTTCTGACACCTGACTCTGCATTTTCTTCAATTGAATGGAAGGATATTGGAGGCATGACAAAGCTGCAAAAGATACCACAAGTGCGTATGGAGGATGATGGAGTGGCCATTACAGAGGTAGGGAAGTTAAAGCAGTTAAGGGTTCTGAGGGTGCTTTGTTTCGGCGCAGAGCACATTACTTTACTTTTCTTCTCAATCAATGAGATGGAACACTTGCAAGCACTACGCATTGAAAAATCTGGTGATCGCATTGTGGTTGACTTGAACACTGCGTCAATGTCTGGTGGGTCAAGACTTAGGAAGCTTTTCCTTGATATGAAGTTAGAAAGGTTACCAAATTGGTTTCCCCAACTCCGTCATCTTGAGAGATTGACCTTGCGCCACTCTGACTTAAGCAGTGATCCCTTGGAATCACTAAAAGATATGCCTAGTTTGTTGGTGCTCTCTTTATCCCACGCTTATGAAGGTCAAACTTTGCATTTTCAATCGGGAGGGTTCAAGAAACTGAGAAAGCTAAATCTCGAACATCTTTGGAACTTGAATTCGATCCTTATTGATGAGACAGCACTGCAGGCTCTGGAATATTTTGAGTTGACATGCCTGGATGATCTCAGAACTGTCCCCGATGGCATTCAACATCTGAATAAACTTAAATTTGTTCGTGTCCCTTATATGCCAACTCAATTTGTTGAGGAAATTGATCGCATTGGTAAAGACAAGCCCTGGAGAATCAATTATGGCTATATGTGA 2640 0.3939 MEEEALEVGKCILKLLWEAFKRMKDLPKVVDEIQTELDELKNLINLEEQRLMKERKTAFLAEDVIDEFETRIKEKQPQDDRGWAAFPAKAVYHIQTLIPRFLISYKVNDILSDVRNTKERLQRNRPQSTQNNNNVTFHHCRMDPLFMEEEEVVGLAGPTKILTDWLENGQRERTVIFVVGVAGVGKTTLAKHVYDKVICSNFVHHEFFTVSQSNTVEEFLGVMYRHFMKSEPPSDYSILKNEVRGYLRGKRYVLLFDDVWEDKFWETIETALIKNENKSRIIITTRKKSVAKSFTNSTLFKKYNLEEPLTEEECLRLLHKKAGYSSDCPEELKDISLEIVSKCSALPLAIEVVGRVLSQKDRSAHEWGLFSEELNWNLTNPTNPEFNIIEKVIGLSYDNLPTHLRLCLLYFGMYPKHYEIKSGRLVRQWVAEGFVTHEERKTLEEVAQEYLLGLVHTSLVQVASFSMKGKVKTCRVHDLIHNMIRTKVKHTYFGEYIGGGHDQSKSSELVRRLAIETNNDLNRPIERSHIRSIISIPGKQEESWSSDLERNVLKDDMPLKVLDFEGCGLLCVPKMLGNFIYLRYLSFRGTQITVLPKSIGKLVNLETLDIRQTQVLELPKEITKLRKLLHLLTPDSAFSSIEWKDIGGMTKLQKIPQVRMEDDGVAITEVGKLKQLRVLRVLCFGAEHITLLFFSINEMEHLQALRIEKSGDRIVVDLNTASMSGGSRLRKLFLDMKLERLPNWFPQLRHLERLTLRHSDLSSDPLESLKDMPSLLVLSLSHAYEGQTLHFQSGGFKKLRKLNLEHLWNLNSILIDETALQALEYFELTCLDDLRTVPDGIQHLNKLKFVRVPYMPTQFVEEIDRIGKDKPWRINYGYM 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8676g00001 879 SUPERFAMILY L domain-like 475 859 - -
Vium8676g00001 879 Coils Coil 30 57 - -
Vium8676g00001 879 Gene3D - 143 300 IPR027417 -
Vium8676g00001 879 PANTHER DISEASE RESISTANCE PROTEIN RP 53 814 IPR044974 GO:0006952
Vium8676g00001 879 Gene3D - 397 488 IPR036388 -
Vium8676g00001 879 Pfam NB-ARC domain 163 399 IPR002182 GO:0043531
Vium8676g00001 879 PRINTS Disease resistance protein signature 175 190 - -
Vium8676g00001 879 PRINTS Disease resistance protein signature 343 357 - -
Vium8676g00001 879 PRINTS Disease resistance protein signature 600 616 - -
Vium8676g00001 879 PRINTS Disease resistance protein signature 246 260 - -
Vium8676g00001 879 Gene3D Ribonuclease Inhibitor 526 868 IPR032675 -
Vium8676g00001 879 FunFam Probable disease resistance protein At1g63360 397 486 - -
Vium8676g00001 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 411 IPR027417 -
Vium8676g00001 879 Gene3D - 308 396 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8676g00001 Vium-Chr8676 2312 5589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8676g00001 559 679 WRKY Transcription Factor Family AT5G45050 32.283 1.01e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8676g00001 K13457 - gmx:121174068 775.778