Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8675g00003 ATGGATCTTTTGTATACCCTATTGAGTTTCATAGCTTTTTCTCTTCTGGGTATCTTCCTAGTCTTCTGTTTCATCATGTTGACCACGATTCTGGGAAAATCCATTGGAGACCCTGATTATGCTCCAGTGAAAGGAACAGTGTTTAACCAGCTTTTCTACTTCAACACACTCCATGACTACCATGCTGAAATGGCCAAGACGATTCCAACTTTTCGTCTACTGGCTCCTGATCAAAGCGAGGTGTACACTGCAGACCCGAGAAATGTTGAACACATACTGAAAACCAACTTTGATAAGTACTCCAAAGGCAAGTATAACCAGGATATTGTGACTGATCTTTTTGGTGAGGGGATTTTTGCAGTTGATGGTGACAAGTGGAGGCAGCAAAGGAAGCTTGCAAGCTATGAATTCTCCACAAGGGTTCTTAGAGATTTCAGTTGTTCTGTTTTTAGAAGAAATGCTGCCAAGTTGGTCAGAATTATCTCAGAACTTTCCCATCAGGGTCAAGTTTTTGATATGCAAGACATGCTAATGAGATGCACTTTGGACTCAATATTCAAAGTTGGGTTTGGAGCAGAATTGAATTGCTTGGAGGGATCAAGAAAAGAGGGAAGCAAATTCATGAAAGCCTTTGATGAATCAAATGCTTTGATATATTGGCGCTATGTTGATCCTTTCTGGAAGCTCAAGAGGTTTCTTAACATTGGTTGTGAAGCTACACTTAAGAGAAACATCAGAATAATAGATGGTTTTGTGCATGAAGTAATCAATACCAGAAAAGCACAATTGGCAATTCAGCAAGAATCTAATGCTAAAGAGGACATACTATCAAGGTTTTTGATTGAGAGCAAGAAGGACAAAGAAACCATGACTGATCAGTATTTGAGAGACATCATTCTAAACTTTATGGTAGCTGGTAAAGACACAAGTGCAAACACTCTTTCATGGTTCTTCTACATGCTCTGCAAGAACCCTCTTATTGAGGAAAAGATTGTACAAGAAGTGAGAGATGTGATTTGTAGCCATGAAAATGAGGAAAGCATAGATAAATTTGTGGCCAAAATAACAGATGACACCCTTGATAAAATGCATTATCTTCATTCAGCGTTGACAGAAACCTTGAGACTTTATCCTGCAGTTCCTGTGGATGGGAGAGTGGCAGAGACAGATGATGTTCTTCCTGATGGACACAAACTGAAAAGGGGTGATGGAGTTTACTATATGGCCTATGGTATGGGTCGGATGTGCTCCATTTGGGGTGAAGATGCAGAGGAATTTCGTCCTGAAAGATGGCTCAACAATGGAGTTTTCGAGTCTCAATCTCCATTCAAATTCATAGCTTTCAATGCTGGACCAAGAATCTGCTTAGGGAAGGACTTTGCTTACAGACAGATGAAAATAATAGCAATGGCTCTTGTTCATTTCTTCAAGTTCAAACTTGCAAATGGAACACAAAATGTGACTTACAAGGTTATGCTTACGCTTCACATTGACAAGGGTCTTCCTCTTTGTGCAATTCCAAGGTCATGA 1530 0.3987 MDLLYTLLSFIAFSLLGIFLVFCFIMLTTILGKSIGDPDYAPVKGTVFNQLFYFNTLHDYHAEMAKTIPTFRLLAPDQSEVYTADPRNVEHILKTNFDKYSKGKYNQDIVTDLFGEGIFAVDGDKWRQQRKLASYEFSTRVLRDFSCSVFRRNAAKLVRIISELSHQGQVFDMQDMLMRCTLDSIFKVGFGAELNCLEGSRKEGSKFMKAFDESNALIYWRYVDPFWKLKRFLNIGCEATLKRNIRIIDGFVHEVINTRKAQLAIQQESNAKEDILSRFLIESKKDKETMTDQYLRDIILNFMVAGKDTSANTLSWFFYMLCKNPLIEEKIVQEVRDVICSHENEESIDKFVAKITDDTLDKMHYLHSALTETLRLYPAVPVDGRVAETDDVLPDGHKLKRGDGVYYMAYGMGRMCSIWGEDAEEFRPERWLNNGVFESQSPFKFIAFNAGPRICLGKDFAYRQMKIIAMALVHFFKFKLANGTQNVTYKVMLTLHIDKGLPLCAIPRS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8675g00003 509 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 448 457 IPR017972 GO:0005506|GO:0016705
Vium8675g00003 509 PRINTS E-class P450 group I signature 455 478 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8675g00003 509 PRINTS E-class P450 group I signature 367 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8675g00003 509 PRINTS E-class P450 group I signature 445 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8675g00003 509 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8675g00003 509 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8675g00003 509 SUPERFAMILY Cytochrome P450 50 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8675g00003 509 PANTHER CYTOCHROME P450 24 501 - -
Vium8675g00003 509 Pfam Cytochrome P450 48 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8675g00003 509 Gene3D Cytochrome P450 34 507 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8675g00003 509 CDD CYP86A 69 501 - -
Vium8675g00003 509 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8675g00003 509 PRINTS P450 superfamily signature 446 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8675g00003 509 PRINTS P450 superfamily signature 455 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium8675g00003 509 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8675g00003 Vium-Chr8675 6643 10920 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8675g00003 7 509 Cytochrome P450 AT2G45510 63.116 0.0 692
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8675g00003 - - gmx:100792128 939.488