Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8675g00002 ATGGGAGAAAACCCGGAACGACAATGGTGCCTCAGTGACTTCGAAATCGGAAAGCCTCTTGGAAAAGGCAAATTCGGCAGAGTCTACGTCGCCCGAGAACGCAAGAGCAAATTTGTTGTTGCATTGAAGGTTATTTCGAAGGAGCAATTAGAGAAGTACAAAATCCATCATCAACTGAGGAGGGAGATGGAGATTCAGTACAGTCTGAAGCATCCGAACGTACTTCGTCTGTATGGCTGGTTTCATGACTCCGATAACGTCTTTTTAATTCTGGAATATGCTCACAATGGTGAGCTTTACAAGGAGCTTAGCAGAAAAGGGCATTTCAGCGAGCAACAAGCTGCCACGTATATTTTAAGCCTCACAAAGGCATTGGCGTATTGTCACGATAAGCATGTTATTCACAGGGATATCAAGCCTGAAAATTTGTTACTTGATCATGAGGGTCGTCTTAAGATTGCAGACTTTGGTTGGTCAGTACAGTCTAGAAGCAAAAGGCATACCATGTGTGGAACCTTGGATTATTTAGCACCCGAAATGGTAGAAAACAAAGCTCATGATTATGCAGTTGATAACTGGACTTTAGGTATCCTTTGCTATGAATTCCTTTATGGTGCTCCGCCATTTGAGGCTGATAGTCAAGTTGATACCTTCAAAAGGATAATGAAGGTTGACTTAAGTTTCCCCTCTACTCCTTATGTTTCTTCAGAAGCCAAACATCTTATTAGTCGGCTTCTGGTAAAAGACTCTTCACGAAGGCTCTCTCTTCAGAGGATAATGGAGCATCCTTGGATAATCAAGAATGCAAATCCTTTAGGTGTCTGCAGCTAG 831 0.4248 MGENPERQWCLSDFEIGKPLGKGKFGRVYVARERKSKFVVALKVISKEQLEKYKIHHQLRREMEIQYSLKHPNVLRLYGWFHDSDNVFLILEYAHNGELYKELSRKGHFSEQQAATYILSLTKALAYCHDKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGILCYEFLYGAPPFEADSQVDTFKRIMKVDLSFPSTPYVSSEAKHLISRLLVKDSSRRLSLQRIMEHPWIIKNANPLGVCS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8675g00002 276 CDD STKc_Aurora 13 265 - -
Vium8675g00002 276 Gene3D Phosphorylase Kinase; domain 1 3 97 - -
Vium8675g00002 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Vium8675g00002 276 Pfam Protein kinase domain 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8675g00002 276 FunFam Aurora kinase A 6 97 - -
Vium8675g00002 276 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Vium8675g00002 276 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 5 275 IPR030616 GO:0004672
Vium8675g00002 276 ProSiteProfiles Protein kinase domain profile. 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8675g00002 276 SUPERFAMILY Protein kinase-like (PK-like) 7 269 IPR011009 -
Vium8675g00002 276 PIRSF ILK 2 268 - -
Vium8675g00002 276 Gene3D Transferase(Phosphotransferase) domain 1 98 273 - -
Vium8675g00002 276 FunFam Serine/threonine-protein kinase ark1 6 273 - -
Vium8675g00002 276 SMART serkin_6 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8675g00002 Vium-Chr8675 789 6162 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8675g00002 6 271 CBL-interacting serine-threonine protein kinases AT5G10930 39.560 7.31e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Vium8675g00002 Pkinase 2.2e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8675g00002 K08850 - gmx:100775802 517.309