Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8675g00001 ATGGGAGAAAACCCGGAACGACAATGGTGCCTCAGTGACTTCGAAATCGGAAAGCCTCTTGGAAAAGGCAAATTCGGCAGAGTCTACGTCGCCCGAGAACGCAAGAGCAAATTTGTTGTTGCATTGAAGGTTATTTCGAAGGAGCAATTAGAGAAGTACAAAATCCATCATCAACTGAGGAGGGAGATGGAGATTCAGTACAGTCTGAAGCATCCGAACGTACTTCGTCTGTATGGCTGGTTTCATGACTCCGATAACGTCTTTTTAATTCTGGAATATGCTCACAATGGTGAGCTTTACAAGGAGCTTAGCAGAAAAGGGCATTTCAGCGAGCAACAAGCTGCCACGGGTCGTCTTAAGATTGCAGACTTTGGTTGGTCAGTACAGTCTAGAAGCAAAAGGCATACCATGTGTGGAACCTTGGATTATTTAGCACCCGAAATGGTAGAAAACAAAGCTCATGATTATGCAGTTGATAACTGGACTTTAGGTATCCTTTGCTATGAATTCCTTTATGGTGCTCCGCCATTTGAGGCTGATAGTCAAGTTGATACCTTCAAAAGGATAATGAAGGTTGACTTAAGTTTCCCCTCTACTCCTTATGTTTCTTCAGAAGCCAAACATCTTATTAGTCGGCTTCTGGTAAAAGACTCTTCACGAAGGCTCTCTCTTCAGAGGATAATGGAGCATCCTTGGATAATCAAGAATGCAAATCCTTTAGGTGTCTGCAGCTAG 735 0.4327 MGENPERQWCLSDFEIGKPLGKGKFGRVYVARERKSKFVVALKVISKEQLEKYKIHHQLRREMEIQYSLKHPNVLRLYGWFHDSDNVFLILEYAHNGELYKELSRKGHFSEQQAATGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGILCYEFLYGAPPFEADSQVDTFKRIMKVDLSFPSTPYVSSEAKHLISRLLVKDSSRRLSLQRIMEHPWIIKNANPLGVCS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8675g00001 244 Gene3D Transferase(Phosphotransferase) domain 1 114 241 - -
Vium8675g00001 244 Gene3D Phosphorylase Kinase; domain 1 3 97 - -
Vium8675g00001 244 FunFam Aurora kinase A 6 97 - -
Vium8675g00001 244 CDD STKc_Aurora 13 233 - -
Vium8675g00001 244 Pfam Protein kinase domain 14 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8675g00001 244 Pfam Protein kinase domain 116 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8675g00001 244 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Vium8675g00001 244 ProSiteProfiles Protein kinase domain profile. 14 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8675g00001 244 SUPERFAMILY Protein kinase-like (PK-like) 7 237 IPR011009 -
Vium8675g00001 244 PIRSF ILK 2 116 - -
Vium8675g00001 244 PIRSF ILK 113 236 - -
Vium8675g00001 244 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 5 243 IPR030616 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8675g00001 Vium-Chr8675 789 6162 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8675g00001 6 239 CBL-interacting serine-threonine protein kinases AT5G10930 33.333 1.42e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Vium8675g00001 Pkinase 1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8675g00001 K08850 - gmx:100775802 435.647