Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium866g00011 ATGGAGACAGAGAACGGGGATACCAAGTCCAGAAAGATGGAAGACTACGAAGTGATAGAGCAAATTGGAAGAGGCGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCCAAACAGACAGAGAAGTTCAAACGTACTGCACACCAAGAGATGAACCTGATTGCAAAACTGAATAACCCATACATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACCACATATGCATTATAACAGGCTATTGTGAAGGAGGTGACATGGCAGATAACATAAAGAAAGCTCGAGGGTCATTTTTTCCGGAAGAGAAAGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTTGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTTCTCACCAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTACTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTCGCTGATATACCTTATGGTTATAAATCAGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGGACATCAACCTGCATTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCTGCATTTCTCCCCTGCCAATTGTTTATTCTTCCACACTGAAACAACTTATCAAGAGCATGCTTAGAAAAAATCCAGAGCATAGGCCAACCGCGGCTGAATTGTTAAGGCATCCGCTTTTACAACCTTATGTTCTTCGTTGTCATAATGCATCCTCTAATATTCTTCCAGTATATCCCATAGTTAATTCAAAGGATAAAACAAGAAGATCTAATAAATCTAGTGGTGGCAAGGACCATAAGGACAAAGAAGCAAGCTTAGTAAATCGTTTGGAACGGATTCATCCAATTGAGGGAAATGGAGATATACTCGTAAGCAATCTTCCTAATGATGCTGTTACCATCTCAACCAGTGCAGAAGACAATATTGAGACCAGGATGGTTGATCTTACCAGCTACATAGTGGAATCTTCTACTAGTATTAGCGGCTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTTAAAGGTAGACCTGCAAGGGAAACGAATAACAACGAAATCTGTTTAAAGAGTTCACAAGAATCACTGCATGAGGAACAGATATTTGCTGCTAAACATTTTCATAAATTAGAAGATGTCATTAATGCAGTGAACCCAGAAGTTGAAGACGGTTCTTGCAATGAAGGTTTGGACAATGCTGAAGCACCAAGGGAAGATTCGAGCCTTGACATCTCTGGTAAATCAACAATGTCCAGTGCAGGCAGTAGCAGCACTGATAAAGATAAGTCCATCAATGAGGAAAAGCCATCACTAACTGTGAATCATATTACGGTCGAACATGATACCGAATCTGGAAACCAATTGAATGTATTTACAGAAGGCTCACACATGAACGGCTTGACATCTGATTGTAATGATGCACGTGGAGTTAAGGATGACGACACAGCTAACAGACACATTCTCTCCACGCATAAAGATGATAACACGGTGGAGGTTGATCAGACAAGTGGCGTTTCATTGAGTGTAATAACAGAAGTCGTCGGGGACGAGACAAATCTGTTGGATAGTCCCTGCCAACAAAGAGCTGATGCTCTGGAATCTCTGCTCGAATTATGTGCTCAGCTACTCAAGCAAGATAAACTTGAAGAGCTTGCTGGGATTCTGAGACCATTTGGAAAAGAAGCTGTATCATCAAGAGAAACAGCAATATGGCTGGCAAAAAGCCTCATTTCTGCCCAAAAATTTAATCCTCAGACCTAG 1914 0.4175 METENGDTKSRKMEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDMADNIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLTSSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAGHQPAFRAPDMAGLINKINRSCISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNILPVYPIVNSKDKTRRSNKSSGGKDHKDKEASLVNRLERIHPIEGNGDILVSNLPNDAVTISTSAEDNIETRMVDLTSYIVESSTSISGSKDGSTTSESTICSVCKEDFKGRPARETNNNEICLKSSQESLHEEQIFAAKHFHKLEDVINAVNPEVEDGSCNEGLDNAEAPREDSSLDISGKSTMSSAGSSSTDKDKSINEEKPSLTVNHITVEHDTESGNQLNVFTEGSHMNGLTSDCNDARGVKDDDTANRHILSTHKDDNTVEVDQTSGVSLSVITEVVGDETNLLDSPCQQRADALESLLELCAQLLKQDKLEELAGILRPFGKEAVSSRETAIWLAKSLISAQKFNPQT 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium866g00011 637 CDD STKc_Nek 15 270 - -
Vium866g00011 637 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Vium866g00011 637 SMART serkin_6 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium866g00011 637 Gene3D Transferase(Phosphotransferase) domain 1 98 324 - -
Vium866g00011 637 ProSiteProfiles Protein kinase domain profile. 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium866g00011 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Vium866g00011 637 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 13 588 - -
Vium866g00011 637 MobiDBLite consensus disorder prediction 295 315 - -
Vium866g00011 637 FunFam serine/threonine-protein kinase Nek6 isoform X2 96 284 - -
Vium866g00011 637 SUPERFAMILY Protein kinase-like (PK-like) 13 300 IPR011009 -
Vium866g00011 637 MobiDBLite consensus disorder prediction 460 477 - -
Vium866g00011 637 Pfam Protein kinase domain 16 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium866g00011 637 MobiDBLite consensus disorder prediction 438 487 - -
Vium866g00011 637 FunFam Serine/threonine-protein kinase Nek6 1 95 - -
Vium866g00011 637 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium866g00011 Vium-Chr866 101180 106641 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium866g00011 9 271 MAP Kinase Kinase Kinase AT3G13530 32.830 6.90e-38 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vium866g00011 Pkinase 6.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium866g00011 K08857 - gmx:100793379 1076.62