Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium866g00009 ATGGAAGACTACGAAGTGATAGAGCAAATTGGAAGAGGCGCTTTTGGCTCTGCCTTCCTCGTTCTTCACAAGTCCGAGAAAAAGAGGTATGTGCTGAAAAAGATTCGGTTGGCCAAACAGACAGAGAAGTTCAAACGTACTGCACACCAAGAGATGAACCTGATTGCAAAACTGAATAACCCATACATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACCACATATGCATTATAACAGGCTATTGTGAAGGAGGTGACATGGCAGATAACATAAAGAAAGCTCGAGGGTCATTTTTTCCGGAAGAGAAAGTCTGCAAATGGCTGACTCAGTTGTTGATAGCTGTTGACTACTTGCACTCTAATCGTGTAATCCACAGAGATCTTAAGTGTTCCAACATATTTCTCACCAAAGACAACAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTTAATGCAGAAGACCTTACTTCCTCGGTTGTTGGAACTCCAAATTACATGTGTCCTGAGCTCCTCGCTGATATACCTTATGGTTATAAATCAGATATGTGGTCTCTTGGTTGCTGCATGTTTGAGATTGCTGGACATCAACCTGCATTTCGTGCTCCAGACATGGCTGGACTTATCAATAAAATAAACAGATCCTGCATTTCTCCCCTGCCAATTGTTTATTCTTCCACACTGAAACAACTTATCAAGAGCATGCTTAGAAAAAATCCAGAGCATAGGCCAACCGCGGCTGAATTGTTAAGGCATCCGCTTTTACAACCTTATGTTCTTCGTTGTCATAATGCATCCTCTAATATTCTTCCAGTATATCCCATAGTTAATTCAAAGGATAAAACAAGAAGATCTAATAAATCTAGTGGTGGCAAGGACCATAAGGACAAAGAAGCAAGCTTAGTAAATCGTTTGGAACGGATTCATCCAATTGAGGGAAATGGAGATATACTCGTAAGCAATCTTCCTAATGATGCTGTTACCATCTCAACCAGTGCAGAAGACAATATTGAGACCAGGATGGTTGATCTTACCAGCTACATAGTGGAATCTTCTACTAGTATTAGCGGCTCAAAAGATGGGTCAACAACATCTGAATCAACTATTTGCAGTGTGTGCAAGGAGGACTTTAAAGGTAGACCTGCAAGGGAAACGAATAACAACGAAATCTGTTTAAAGAGTTCACAAGAATCACTGCATGAGGAACAGATATTTGCTGCTAAACATTTTCATAAATTAGAAGATGTCATTAATGCAGTGAACCCAGAAGTTGAAGACGGTTCTTGCAATGAAGGTTTGGACAATGCTGAAGCACCAAGGGAAGATTCGAGCCTTGACATCTCTGGTAAATCAACAATGTCCAGTGCAGGCAGTAGCAGCACTGATAAAGATAAGTCCATCAATGAGGAAAAGCCATCACTAACTGTGAATCATATTACGGTCGAACATGATACCGAATCTGGAAACCAATTGAATGTATTTACAGAAGGCTCACACATGAACGGCTTGACATCTGATTGTAATGATGCACGTGGAGTTAAGGATGACGACACAGCTAACAGACACATTCTCTCCACGCATAAAGATGATAACACGGTGGAGGTTGATCAGACAAGTGGCGTTTCATTGAGTGTAATAACAGAAGTCGTCGGGGACGAGACAAATCTGTTGGATAGTCCCTGCCAACAAAGAGCTGATGCTCTGGAATCTCTGCTCGAATTATGTGCTCAGCTACTCAAGCAAGATAAACTTGAAGAGCTTGCTGGGATTCTGAGACCATTTGGAAAAGAAGCTGTATCATCAAGAGAAACAGCAATATGGCTGGCAAAAAGCCTCATTTCTGCCCAAAAATTTAATCCTCAGACCTAG 1878 0.4159 MEDYEVIEQIGRGAFGSAFLVLHKSEKKRYVLKKIRLAKQTEKFKRTAHQEMNLIAKLNNPYIVEYKDAWVEKEDHICIITGYCEGGDMADNIKKARGSFFPEEKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDNNIRLGDFGLAKRLNAEDLTSSVVGTPNYMCPELLADIPYGYKSDMWSLGCCMFEIAGHQPAFRAPDMAGLINKINRSCISPLPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPLLQPYVLRCHNASSNILPVYPIVNSKDKTRRSNKSSGGKDHKDKEASLVNRLERIHPIEGNGDILVSNLPNDAVTISTSAEDNIETRMVDLTSYIVESSTSISGSKDGSTTSESTICSVCKEDFKGRPARETNNNEICLKSSQESLHEEQIFAAKHFHKLEDVINAVNPEVEDGSCNEGLDNAEAPREDSSLDISGKSTMSSAGSSSTDKDKSINEEKPSLTVNHITVEHDTESGNQLNVFTEGSHMNGLTSDCNDARGVKDDDTANRHILSTHKDDNTVEVDQTSGVSLSVITEVVGDETNLLDSPCQQRADALESLLELCAQLLKQDKLEELAGILRPFGKEAVSSRETAIWLAKSLISAQKFNPQT 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium866g00009 625 SUPERFAMILY Protein kinase-like (PK-like) 1 288 IPR011009 -
Vium866g00009 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vium866g00009 625 FunFam serine/threonine-protein kinase Nek6 isoform X2 84 272 - -
Vium866g00009 625 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vium866g00009 625 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium866g00009 625 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium866g00009 625 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium866g00009 625 MobiDBLite consensus disorder prediction 283 303 - -
Vium866g00009 625 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vium866g00009 625 FunFam Serine/threonine-protein kinase Nek6 1 83 - -
Vium866g00009 625 MobiDBLite consensus disorder prediction 448 465 - -
Vium866g00009 625 CDD STKc_Nek 3 258 - -
Vium866g00009 625 Gene3D Transferase(Phosphotransferase) domain 1 86 312 - -
Vium866g00009 625 MobiDBLite consensus disorder prediction 426 475 - -
Vium866g00009 625 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium866g00009 Vium-Chr866 100797 106641 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium866g00009 4 259 MAP Kinase Kinase Kinase AT3G13530 33.074 1.19e-37 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vium866g00009 Pkinase 6.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium866g00009 K08857 - gmx:100793379 1055.05