Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium866g00006 ATGGAAGAACCATACTCCATGCTCCAGAATTCAACAAATATGGAACAAACCGTGTTAACCACTCAAGAAGGCACGCCCGGGAATTGGAATCAAGACGCAATGCTACTCCATCAACACCTTGTCACTCCACAAATGGAAAGCACTTCTCAAGGCTCAATCAACAATTCCACCTGCAGTTCATCCCTTCAGTATCATGTTTTATCCCTTTTAGAGGGAATAATTAACGAAAAACACATAGAAGAAACCCTAATCCAATCCAAGCTATTGTCTTGCAATGTTGGGTCCATTGCTGCCACAGCGACAGCAACGATTATCAATGAAAGGGAACGAAACGATTGTGGAGAGAATGATCGAAGACAGCACGAGTCGTGTCTTGATTTGGTTGCTAAAACAATCGGTAGCAAGAGCTCTGTGTATCGAGGAGTAATCAAGTGCAACGATGATCGTTTTGAAGCATTTGTGTGGGATAACAGCGATCCAGGGGAAAAAGGAAGAACAGTTTATATTGGTGCTTATTCATCTGAAGTTGACGCCGCCAAAGCTCATGATTTGGTGTCAATCAGAATAGGGGGCTTAAAAGCATTAACCAATTTTCATGTGAGATGTTATTCCAAGGACATGGATGAAATGAGAAGAATGAGCAAATGGGACTATATTTGTGCTGTTAGAGGGTTGGGCAAGGGCTATACAGACGGTGATTCCCCTTTCCGTGGCGTCTACAGGGTACCCACAAGCAGAAAATGGGAAGCAAGGCTCGGTCGTGAGGGGTCACCAACCATACACTTGGGAACTTATTACACTGCAGAGGATGCAGCGAGAGCTTATGACATTATATCAATAAAACTGAAGGGAGGGAAAGCAATTACCAACTTTGACTGGAATTCGTATGAAACTGAGGGCATAATGGAGACTGTGATTGCTCAAGCAACGGACGGATCGATCATTCTGCAGAAAGAAGAAAAAAACAAAGAACCCGAAGCATCTCCTCAAAACAGCTCCTCAGTTCAATGCCATCCTCAACCACCCAGCATCCCATCCATTTGTCGTTGCTGCCACAACCAAATTCTCACACCAACCAACCCTCATGCTCTTGGTACCATTGCTGATACTGCAGGAAACAGTGCAATTAACAATTCAATTGTTAACGATGCTGTACAGTTTCCAAACGAGAATGCAACACAGCAACAGCCCCGACCACTTCAGACTCCGAGGCAAGTGAGTTTCAACGATGGCTCCAATCAGAACCTTGTCAACAACAACAACAACAACAATCAGCTTCCAAATCATAATGCAGCACAGCAACAGTCACTTCAGACTCCGAGGCAAGTGAGTTTTAACAATGCCTTTAATCTGAACCTTGTGAACAATAACTACAACAACAGCAACAACCAGTTTCTGCCTCAGGGTTCTAACCTTGCTTTGCCTGCTACTGGCATCCGAAATCTAGAGTTAGAAAAGTGCGTCCGTTTCCCTGATTGGAGATCAGGTTTCGGAAAGAAGTTACTTGGGGGGAACTTGGAATTGGAACCTTTAAACAACGTTGCTGCCCTCAGTCTGCAAGCTCTACCACAAGTCACGCTGAATGGAAGTACAGGAGCAACACAGCTACACGCACCTGCATTGCACCAAAGTTATGAGCATCAGAACTTGAACTCCTGCACCCCTGATAGTTTTCAGAATCCTGTTTCTGAACCAAACAACAACGGCTTCCAAAGTCAACTTGATTTGGACATGAGAGATTATCTCAACAGATCTTACATAGAAGACAACGATTTCACATGTGATTATGACATGTTTTCAGCCATGAATGGGGGTAGATAG 1821 0.4404 MEEPYSMLQNSTNMEQTVLTTQEGTPGNWNQDAMLLHQHLVTPQMESTSQGSINNSTCSSSLQYHVLSLLEGIINEKHIEETLIQSKLLSCNVGSIAATATATIINERERNDCGENDRRQHESCLDLVAKTIGSKSSVYRGVIKCNDDRFEAFVWDNSDPGEKGRTVYIGAYSSEVDAAKAHDLVSIRIGGLKALTNFHVRCYSKDMDEMRRMSKWDYICAVRGLGKGYTDGDSPFRGVYRVPTSRKWEARLGREGSPTIHLGTYYTAEDAARAYDIISIKLKGGKAITNFDWNSYETEGIMETVIAQATDGSIILQKEEKNKEPEASPQNSSSVQCHPQPPSIPSICRCCHNQILTPTNPHALGTIADTAGNSAINNSIVNDAVQFPNENATQQQPRPLQTPRQVSFNDGSNQNLVNNNNNNNQLPNHNAAQQQSLQTPRQVSFNNAFNLNLVNNNYNNSNNQFLPQGSNLALPATGIRNLELEKCVRFPDWRSGFGKKLLGGNLELEPLNNVAALSLQALPQVTLNGSTGATQLHAPALHQSYEHQNLNSCTPDSFQNPVSEPNNNGFQSQLDLDMRDYLNRSYIEDNDFTCDYDMFSAMNGGR 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium866g00006 606 Gene3D AP2/ERF domain 138 201 IPR036955 GO:0003700|GO:0006355
Vium866g00006 606 Gene3D AP2/ERF domain 235 293 IPR036955 GO:0003700|GO:0006355
Vium866g00006 606 Pfam AP2 domain 236 284 IPR001471 GO:0003700|GO:0006355
Vium866g00006 606 CDD AP2 137 198 IPR001471 GO:0003700|GO:0006355
Vium866g00006 606 MobiDBLite consensus disorder prediction 390 439 - -
Vium866g00006 606 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 107 394 - -
Vium866g00006 606 CDD AP2 236 294 IPR001471 GO:0003700|GO:0006355
Vium866g00006 606 ProSiteProfiles AP2/ERF domain profile. 138 199 IPR001471 GO:0003700|GO:0006355
Vium866g00006 606 SMART rav1_2 138 205 IPR001471 GO:0003700|GO:0006355
Vium866g00006 606 SMART rav1_2 235 298 IPR001471 GO:0003700|GO:0006355
Vium866g00006 606 MobiDBLite consensus disorder prediction 320 339 - -
Vium866g00006 606 SUPERFAMILY DNA-binding domain 235 293 IPR016177 GO:0003677
Vium866g00006 606 ProSiteProfiles AP2/ERF domain profile. 235 292 IPR001471 GO:0003700|GO:0006355
Vium866g00006 606 SUPERFAMILY DNA-binding domain 137 200 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium866g00006 Vium-Chr866 56546 60140 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium866g00006 130 324 AP2-EREBP Transcription Factor Family AT1G51190 37.811 6.75e-40 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium866g00006 AP2 1.5e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium866g00006 - K09285 pvu:PHAVU_001G137500g 967.222