Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8668g00024 ATGGTATTTGGGGTCATGGATAACTCAAATGATTCATCATCATCCTTGAGTTTTGTATCATCTCACCTCTCACATGGTTTTAGTAATCACAACGCGTCTTCCTCTACCAGCAATGAGCATGTGGCAAATATTGAAATTTTGACTCTGAGTAAGCTCAGTGGAGGCCTTGAGAAGTTACTGATTGATGCTGAATATGATTATAGTGATGCTGAGATTCTCGTTGAAGACATGTGTGTGGGTGTTCATCGCTGTATATTGGCCTCGCGTAGTCCTTTTTTTCATGAGCTTTTTAAAAAAGGAACGGGTGGATCAGGGAAGGAAGGAAAACCAAGGTATCTCATGTCAGAATTGGTGCCTTATGGCACAGTTGGATATGAATCTTTCCAAGTTTTCTTGTACTATTTGTACACTGGAAAGCTAAAAGCTTCGCCAACAGAAGTGACAACATGTGTTGATGAAACATGTATCCATGATGCATGTCGCCCTGCTATCAATTATGCATTGGAGCTGATGTATGCTTCTACCACTTTTCAGATGAAAGAGCTAGTTTTACTTTTTCAGCGGCATCTGCTAAACTTTGTTGAGAAGGCTCTTGTGGAAGATGTGATTCCTATTCTTTTGGCTGCTTTCAACTGCCAAATAGACCAGCTTCTCTCTCGGTGCATTCACAGAGTTGCAAGGTCTGACTTTGACATCATATCTTTGGAAAAAGAGCTCCCTTATGAAGTTGTGGCTGAAATCAAATCGTGCCGTCTCTCATCTCAGCCAGAATCGGCAGCTGATACAATGGAAGTGGAGCCTTTGAGTGAAAAGAGTATCAGCAGAATCCATAAATCATTGGACTCTGATGATGTTGAGCTTCTGAAGCTTCTTCTAAATGAGTCTAGAGTCACTCTAGATGATGCACATGCGCTGCACTATGCCTGTGCCTACAGTGATTCTAAGGTTATTCAAGAAGTTCTTGGTCTAGGTATGGCTGATATTCTTCGGAGAAATTCCCGAGGATACACGGTTCTTCATGTGGCTGCAAGGCGAAAGGATCCATCCATTTTGGTGGCACTGCTGAATAAAGGGGCATGTGCAACAGATACCACTCCAGATGGTCAAACTGCTCTTTCAATTTGTCAGAGGTTGACAAGACGCAAGGATTATCATGAGAAAACAGTGCAGGGTAAGGAATCTAACAAGGATAGACTCTGTGTTGATCTCCTGGAGAGGGAGATGAGAAGAAGTTCTATGACTGTGAGTATGTCTGTATCATCACAGTTAACAGCTGATGATTTGCACATGAGACTGGATTACCTTGAAGATAGAGTGTTATTTGCTCGGTTGTTGTTTCCTGCTGAGGCTAGGGTAGCCATTGAGAATGCTGAGGCAGATTCTTCATCACTGTACGCAAACGAATCAGCATTGAAGGGCACATATGGAAATATAAAAGAAGTTGATCTAAATGAATCTCCCTCTGCTCGAGCCAGAAAACTTCAGTTAAGACTGCATGCCCTTATGAAAACAGTTGAGAATGGTAGGCGCTTCTTTCCTCATTGTTCAGAAGTGCTTGATAAGTTTCTGGAAGATGATATGCCAGATGTGTTCTTCCTAGAGAAAGGCAGTGAAGAAGAGCAGAGAATGAAGAAAGCACGATTCATGGAACTTAAAGATGATGTGCAGAAAGCATTTCACAAAGATATGGCTGAAAATAACCATTCAGCATTTTCATCTTCAGTGTCCTCTTCGTCATCTTCTACTCGGAGGGAAGGTCTTAACCACAGAGTGAGGAGAAAATGA 1785 0.4202 MVFGVMDNSNDSSSSLSFVSSHLSHGFSNHNASSSTSNEHVANIEILTLSKLSGGLEKLLIDAEYDYSDAEILVEDMCVGVHRCILASRSPFFHELFKKGTGGSGKEGKPRYLMSELVPYGTVGYESFQVFLYYLYTGKLKASPTEVTTCVDETCIHDACRPAINYALELMYASTTFQMKELVLLFQRHLLNFVEKALVEDVIPILLAAFNCQIDQLLSRCIHRVARSDFDIISLEKELPYEVVAEIKSCRLSSQPESAADTMEVEPLSEKSISRIHKSLDSDDVELLKLLLNESRVTLDDAHALHYACAYSDSKVIQEVLGLGMADILRRNSRGYTVLHVAARRKDPSILVALLNKGACATDTTPDGQTALSICQRLTRRKDYHEKTVQGKESNKDRLCVDLLEREMRRSSMTVSMSVSSQLTADDLHMRLDYLEDRVLFARLLFPAEARVAIENAEADSSSLYANESALKGTYGNIKEVDLNESPSARARKLQLRLHALMKTVENGRRFFPHCSEVLDKFLEDDMPDVFFLEKGSEEEQRMKKARFMELKDDVQKAFHKDMAENNHSAFSSSVSSSSSSTRREGLNHRVRRK 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8668g00024 594 SUPERFAMILY POZ domain 65 192 IPR011333 -
Vium8668g00024 594 MobiDBLite consensus disorder prediction 562 594 - -
Vium8668g00024 594 SMART ANK_2a 300 330 IPR002110 GO:0005515
Vium8668g00024 594 SMART ANK_2a 271 299 IPR002110 GO:0005515
Vium8668g00024 594 SMART ANK_2a 334 363 IPR002110 GO:0005515
Vium8668g00024 594 SUPERFAMILY Ankyrin repeat 269 377 IPR036770 -
Vium8668g00024 594 Gene3D Potassium Channel Kv1.1; Chain A 32 226 IPR011333 -
Vium8668g00024 594 Gene3D - 268 408 IPR036770 -
Vium8668g00024 594 MobiDBLite consensus disorder prediction 566 584 - -
Vium8668g00024 594 Pfam NPR1/NIM1 like defence protein C terminal 376 578 IPR021094 -
Vium8668g00024 594 SMART BTB_4 68 194 IPR000210 GO:0005515
Vium8668g00024 594 ProSiteProfiles Ankyrin repeat profile. 334 359 IPR002110 GO:0005515
Vium8668g00024 594 PANTHER REGULATORY PROTEIN NPR3 28 585 IPR044292 GO:0009862|GO:2000022|GO:2000031
Vium8668g00024 594 Pfam Ankyrin repeats (3 copies) 283 362 IPR002110 GO:0005515
Vium8668g00024 594 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 241 398 - -
Vium8668g00024 594 CDD BTB_POZ_NPR_plant 51 194 - -
Vium8668g00024 594 ProSiteProfiles BTB domain profile. 68 144 IPR000210 GO:0005515
Vium8668g00024 594 ProSiteProfiles Ankyrin repeat region circular profile. 334 359 - -
Vium8668g00024 594 FunFam Regulatory protein NPR3 42 226 - -
Vium8668g00024 594 Pfam Domain of unknown function (DUF3420) 229 277 IPR024228 -
Vium8668g00024 594 Pfam BTB/POZ domain 65 182 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8668g00024 Vium-Chr8668 153040 157203 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium8668g00024 NPR1_like_C 4.7e-83 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8668g00024 K14508 - gmx:100814739 964.526