Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8668g00020 ATGAAAAATCGTGAGAGAAGTGTCAGGCAGTACAACAAATCTGAACTTCCACGCCTTCGTTGGACACCTCAACTCCATCACCACTTTGTTCAAGCTATTGAAAGCCTTGGTGGAAAACACAAGGCAACTCCGAAGAGAATTCTGCAGCAGATGCATGTGAGAGGGCTCAAGATCGCTCACATCAAAAGCCATCTTCAGATGTACAGAAACATGAAAGGCTATGCCAAGAAATGTGCAGATGAGTTGATGGAAGGAAATGTAAAGGATTTCAAAGTATGCTCCATTTGTCCAACCCAAAGAATAATGAAGAAGGTGGAACTTCAGCTCTTAGACAACAAAAAAGGACTTTCACAAAGCAACGAAGAAACTGATTATGATCTAAACCAGGAAGTTGAGTCAAGTTCATGGTTGGTTAGAGATGATGTGTCAAATGAAGAAGAAAATGTTCCTAATCTATTATTTTCCTTCAGCACACCACTAATTTCTATGATGAAAAGTGAGAATAGCAAAAACATGATGCATTTTTCCTCATCAACTGCACCACCTAATCATTCTATCGATTCTAGTTATACACCTTCCTTTGGAAATACTTATATTAACTTAGACCTAGCAATATGA 618 0.3851 MKNRERSVRQYNKSELPRLRWTPQLHHHFVQAIESLGGKHKATPKRILQQMHVRGLKIAHIKSHLQMYRNMKGYAKKCADELMEGNVKDFKVCSICPTQRIMKKVELQLLDNKKGLSQSNEETDYDLNQEVESSSWLVRDDVSNEEENVPNLLFSFSTPLISMMKSENSKNMMHFSSSTAPPNHSIDSSYTPSFGNTYINLDLAI 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8668g00020 205 Pfam Myb-like DNA-binding domain 19 69 IPR001005 -
Vium8668g00020 205 SUPERFAMILY Homeodomain-like 17 70 IPR009057 -
Vium8668g00020 205 Gene3D - 16 73 - -
Vium8668g00020 205 FunFam Two-component response regulator 12 74 - -
Vium8668g00020 205 NCBIfam myb-like DNA-binding domain, SHAQKYF class 17 71 IPR006447 GO:0003677
Vium8668g00020 205 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 5 118 IPR046955 GO:0003700
Vium8668g00020 205 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 73 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8668g00020 Vium-Chr8668 127040 130768 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8668g00020 8 72 G2-like Transcription Factor Family AT2G42660 61.538 3.29e-24 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium8668g00020 Myb_DNA-binding 4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8668g00020 - - pvu:PHAVU_008G196200g 285.034