Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8668g00014 ATGAAGAACACTATCCCAGGTTGGGATTTTGAGAGTGATACATGTCTCACCAACCAGAGAAAGCCCACAGGGCTGGACCATGAACTTGTAGAACTCCTATGGCAAAATGGGCAAGTAGTTATGCACAGCCAAACAAATAGGAAGCTACCTGGGAATTCATCTAACTTGAGACAGCTGCAGAAAACTACTCAATCAAACAACTTGGATCAAGAAGAGGCAGCTCCATGGATCCAATACCCTCTTGATGACCCTTTAGAACAAGAGTTTTGTTCAAACCTTTTATCTGAGCTACCGCCACCTTGTGAAGTTGAATCTTATTACAAGCCAATCAGAGAATTGGAAGAGGAAAAGTTTGCTAATATTTTCTCCCCTGGTGCCCCCCATCATCCTCCTTCACCTTCACAACCCTTACCATCTATCATGAAATCCTCCTGTGCTCAGGGACTCCAAGAGAATCTCATGTCTGCTCCAGGATTTCATGTTCCTGATTCATCTCAGAAAATCAATGACTTTGGTGCATCACGGAAGGTGCTAAATTTTCCTCACTTTTCAGCACCCCGTAATGTCTCTTCACCATCTCAAAAAACTGCAGTTAACCTCTCACAAAGTGAAGCTAGAGAGCACTCAGTGATCACGGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCCTCAGGACCAAGATGTAAACCGGGTTTCAAGCAATGGCGTTTGGGCCACCACTAATAATGCTACTTTATCTGCTGAGCCTATAGATTGTATCCATAGACGATTTCCTAGAAGTGAGAGAGGAAAATCAGAGATGATTGAACCAACTGTGGCTTCATCTTCCGGTGGCTCAGGTAGTACTGGTATAGGAAGAACTTGTTCTCAATCAACAAGAGAACATGGCCAAAAGAGAAAAGGGACTGAAGAAGAAGCACTAGAGGAGCAAAGTGAGGCCACAGAACTTAAATCAGCAGATGGAAACAAGTTATCTCAGCGTTCCAGAAGAAGCCGTGCAGCTGAAGTGCATAATCTATCCGAAAGGAGAAGAAGAGATAGGATTAACGACAAGATGAGAGCATTGCAGCAACTGATACCAAACAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATCGAATACTTAAAATCACTTCAGTTTCAGCTTCAGGTAATGTGCATGGGGGCTGGCATGACACCAGTTATGTTTCCAGGAATTCAGCACTGTATGCCACAGATGGGAATGGGAATTGGTGGACCTTCTTTGCCTTCCATTCACAACCCAATGCAATTACCAAAAGTGGGTCAAGCCATGTCTGTCACTCAGCCTCAGCCTCAGCCTCATATGCCAAACCACAATTTACTGTGCCAAAATCCAGTTCTGGGTGCCTTCAATTACCAAAATCAGATGCAAAACCAATGCCTTTCAGAACAATATGCACGTTACATGGGCTACCATCTCATGAATAGTGCCTCTCAGCCAATGAACGCGTTGAGATATGGTTCCCAAGCAATGCAACACAGTCAAACAATGATTGCAGGAAGCAATAATAGCAGCGGACCCATGAGTGGAACAGCTAATGTAGCTAATGTTGATGATGCTATTAGTGGCAAAACTGGTTCTTCCACCTTTCACTGA 1629 0.4395 MKNTIPGWDFESDTCLTNQRKPTGLDHELVELLWQNGQVVMHSQTNRKLPGNSSNLRQLQKTTQSNNLDQEEAAPWIQYPLDDPLEQEFCSNLLSELPPPCEVESYYKPIRELEEEKFANIFSPGAPHHPPSPSQPLPSIMKSSCAQGLQENLMSAPGFHVPDSSQKINDFGASRKVLNFPHFSAPRNVSSPSQKTAVNLSQSEAREHSVITVGSSHCGSNHIPQDQDVNRVSSNGVWATTNNATLSAEPIDCIHRRFPRSERGKSEMIEPTVASSSGGSGSTGIGRTCSQSTREHGQKRKGTEEEALEEQSEATELKSADGNKLSQRSRRSRAAEVHNLSERRRRDRINDKMRALQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMCMGAGMTPVMFPGIQHCMPQMGMGIGGPSLPSIHNPMQLPKVGQAMSVTQPQPQPHMPNHNLLCQNPVLGAFNYQNQMQNQCLSEQYARYMGYHLMNSASQPMNALRYGSQAMQHSQTMIAGSNNSSGPMSGTANVANVDDAISGKTGSSTFH 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8668g00014 542 FunFam Basic helix-loop-helix transcription factor 328 391 - -
Vium8668g00014 542 Gene3D - 328 389 IPR036638 GO:0046983
Vium8668g00014 542 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 333 382 IPR011598 GO:0046983
Vium8668g00014 542 Pfam Helix-loop-helix DNA-binding domain 337 383 IPR011598 GO:0046983
Vium8668g00014 542 MobiDBLite consensus disorder prediction 258 346 - -
Vium8668g00014 542 MobiDBLite consensus disorder prediction 293 346 - -
Vium8668g00014 542 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 330 395 IPR036638 GO:0046983
Vium8668g00014 542 SMART finulus 339 388 IPR011598 GO:0046983
Vium8668g00014 542 CDD bHLH_AtPIF_like 333 396 IPR047265 -
Vium8668g00014 542 PANTHER TRANSCRIPTION FACTOR PIF3 20 529 IPR044273 GO:0003700|GO:0006355
Vium8668g00014 542 MobiDBLite consensus disorder prediction 270 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8668g00014 Vium-Chr8668 75770 80687 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8668g00014 7 506 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 33.656 2.05e-52 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium8668g00014 HLH 2.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8668g00014 K16189 - gmx:100811777 767.689