Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8668g00004 ATGAAGCTTTCTTCTTCTGGATTTAATCAACCGGGGGAGGAAGAAGGGGAGAAAAAATGTTTGAATTCTGAGCTTTGGCATGCATGTGCTGGCCCTCTGGTTTCTCTGCCTCCTGTTGGAAGTCGTGTAGTCTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACCAACAGGGAAGTAGATGCACATATTCCTAATTACCCTAACTTGCCACCGCAACTTATCTGTCAGCTTCACAATGTAACAATGCATGCGGATGCTGAAACTGATGAAGTATATGCACAAATGACTCTGCAACCTCTAAGTCCACAAGAGCAAAAGGAGGTGTATCTTATGCCTGCTGAATTGGGCACTCCCAGCAAGCAACCAACAAATTACTTCTGCAAAACATTAACTGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTCCCTCCTCTTGATTACTCACAGCAGCCTCCTGCTCAAGAACTAATTGCTAGAGATCTTCATGATAATGAATGGAAGTTTAGACACATATTTCGAGGTCAGCCCAAAAGGCATCTTCTTACTACTGGTTGGAGTGTCTTTGTCAGTGCCAAGAGGCTTGTTGCGGGTGATTCAGTCCTTTTCATCTGGAATGAAAAAAATCAATTACTCTTGGGCATACGGCGAGCAAATCGTCCACAGACTATCATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCAGCTCATGCAACTGCTACAAACAGCCGCTTTACTATATTCTATAATCCTAGGGCAAGCCCATCTGAATTTGTCATTCCTTTGGCCAAGTATGTTAAAGCAGTATATCATACACGAGTTTCTGTTGGGATGCGATTTAGGATGCTGTTTGAGACAGAAGAATCAAGTGTTCGTCGATACATGGGTACCATAACTGGTATTAGTGATTTAGATCCTGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGAGAGGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCTTTGACAACATTCCCAATGTATCCATCTCCATTCCCCTTAAGGTTGAGGCGTCCTTGGCCAACGGGCCTACCTTCTTTGTATGGTCTCAAAGATGGAGACATGGGCATTGGTTCTCCATTCATGTGGCTCCAAGGTGGACTTGGGGACCAAGGAATGCAATCTTTAAATTTCCAGGGGCTTGGTGTTACACCATGGATGCAACCTAAACTTGACTCTTCTATGCCAGGTCTTCAACCAGAGTTATACCAAGCAATGGCTTCTTCTGCATTCCAGGAAATGAGGACAATAGATCCCTCAAAATCTTCCCAACCTCTGTTGCAGTTTCAGCAGACTTCAAATGTTCCCAGTGCTCATACCTCTGAGGTACAGAGGCAAGTATTACCACAGTCTCAGCCTCAAAGCACCCTTCTACAAAATTTTCAAGAAAACCAAGTGCCTGCTCAGTCACAACTTCTGCAACAGCAGTTATATCGCTACCATCCATATGGTGATCAGCGGCAACAGCATCAACAACTTAAAAATTTGCCTGTTCAGCAGCAGTTACCAAATGTCATCTCTCCCTTATCTAATTTTGCATCAGGTACCCAGTCTCAATCTCCTCCCATGCAAGCTCTTGCTACGCATTGCCAGCAGCAGAGTTTTCCTGAACCTATCAGGAATCATATATCTGGTTCTGATGTTTCCCCTATCCAGAGTCTACTAGGAACGTTCTCCCATGATGGAACATCCCAGTTACTTAACTTGAGTGGGTCCAATTCCGTTATATCTTCTGCATCCATCCTACCCAAGCAAATGGCAATTGAACCTCAGGTTCCCTCTGCTTCTGCTCAGTGCGTGTTGCCTCAGGTTGAAAACTTGGGAACATCACAATCAAATGTGTCTGAACTTGCTGTTCTGCCTCCCTTTCCTGGAAGAGAACATTCTGCATACCATGGTGCTGCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATCGATCCCTCTTCTCTTATGCTGCAAAATGGCGTGTCAAACCTGAGAAATATGGGCAGTGTGAATGATTCATTATCATTGCCATTTTCTGCTTCAAATTGTGGTGGTACCACAGGCACTGATTTTCCCTTAAGTTCAAACATGACAACTTCAAGTTGTGTGGATGAATCAGGCTTCTTGCAGTCTTCTGAAAATGTAGACCAAGCAAACACACCGACTGGAACCTTTGTTAAGGTTCACAAGTCAGGGTCCTTTGGCAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGTTGCGTAGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATATTCTTCTTCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATAAAAATCCTATCTCCACTAGAAGTGCAGCAAATGGGCAAAGGTGTCAGTCCTTCTACTTCTGCCCCAGGTCACAAACTTTCTACCTCTGGCAACTCTTGTGATAATTATGCAAGTCAACAGGAGTTGAGAAGTTCCAGAAATGGCATGGCATCAATGGGGTCTTTTCACTACTAG 2688 0.449 MKLSSSGFNQPGEEEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREVDAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQMTLQPLSPQEQKEVYLMPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHATATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPTGLPSLYGLKDGDMGIGSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPKLDSSMPGLQPELYQAMASSAFQEMRTIDPSKSSQPLLQFQQTSNVPSAHTSEVQRQVLPQSQPQSTLLQNFQENQVPAQSQLLQQQLYRYHPYGDQRQQHQQLKNLPVQQQLPNVISPLSNFASGTQSQSPPMQALATHCQQQSFPEPIRNHISGSDVSPIQSLLGTFSHDGTSQLLNLSGSNSVISSASILPKQMAIEPQVPSASAQCVLPQVENLGTSQSNVSELAVLPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQNGVSNLRNMGSVNDSLSLPFSASNCGGTTGTDFPLSSNMTTSSCVDESGFLQSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPKTQRSGWQLVFVDRENDILLLGDDPWQEFVNNVWYIKILSPLEVQQMGKGVSPSTSAPGHKLSTSGNSCDNYASQQELRSSRNGMASMGSFHY 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8668g00004 895 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Vium8668g00004 895 FunFam Auxin response factor 127 231 - -
Vium8668g00004 895 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Vium8668g00004 895 SMART B3_2 129 231 IPR003340 GO:0003677
Vium8668g00004 895 CDD B3_DNA 128 229 IPR003340 GO:0003677
Vium8668g00004 895 Gene3D - 293 365 - -
Vium8668g00004 895 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 851 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium8668g00004 895 Pfam AUX/IAA family 748 843 IPR033389 -
Vium8668g00004 895 SUPERFAMILY CAD & PB1 domains 752 835 - -
Vium8668g00004 895 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium8668g00004 895 SUPERFAMILY DNA-binding pseudobarrel domain 114 258 IPR015300 -
Vium8668g00004 895 FunFam Auxin response factor 754 850 - -
Vium8668g00004 895 ProSiteProfiles PB1 domain profile. 759 845 IPR000270 GO:0005515
Vium8668g00004 895 FunFam Auxin response factor 293 365 - -
Vium8668g00004 895 MobiDBLite consensus disorder prediction 850 882 - -
Vium8668g00004 895 Gene3D - 127 230 IPR015300 -
Vium8668g00004 895 MobiDBLite consensus disorder prediction 456 488 - -
Vium8668g00004 895 Gene3D - 755 850 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8668g00004 Vium-Chr8668 23960 32105 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8668g00004 98 850 B3 DNA Binding Superfamily AT5G37020 55.658 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium8668g00004 AUX_IAA 1.1e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8668g00004 - - gmx:100810798 1664.43