Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8662g00002 ATGGGAAAACACTCTAATTCTTCTTCCTCTTCCATCAGCAGTAGCAGCAACCACCACCACCTTCTCATTTCCACTGCATCCTCTCTCACACAAGAGCTTCCCACTGATCTTAGTCTTGGACTCAGCATTTCCGCCGCTCACCATGGTGGTTCTTCTATTTCAAGGGGGCATTGGCAACAACCACAGCACCCTCTTGTGAACATTTCGCAAGCGGCTGAAGCTAATGATTGCAACGACCATAGCAGCTTCTTTGTGAAGGTCTACATGGAAGGCATTCCAATAGGAAGGAAACTCAATATACTTGCTCATGGAAGCTATTATGAGTTAGTGAAGAGTCTTGAACACATGTTCGACACTACCATTCTTTGGGGGACAGAGATGAATGGAGTGCAACCCGAGAGATGCCATGTACTAACATACGAAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTTCCTTGGGAGATGTTCTTATCCACAGTAAAGAGATTGAAGATCACGAGGGTAGACACATTCGGGTGTTAA 528 0.4564 MGKHSNSSSSSISSSSNHHHLLISTASSLTQELPTDLSLGLSISAAHHGGSSISRGHWQQPQHPLVNISQAAEANDCNDHSSFFVKVYMEGIPIGRKLNILAHGSYYELVKSLEHMFDTTILWGTEMNGVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFGC 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8662g00002 175 Gene3D - 76 174 - -
Vium8662g00002 175 ProSiteProfiles PB1 domain profile. 82 172 IPR000270 GO:0005515
Vium8662g00002 175 SUPERFAMILY CAD & PB1 domains 77 167 - -
Vium8662g00002 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 73 170 IPR003311 GO:0005634|GO:0006355
Vium8662g00002 175 Pfam AUX/IAA family 70 169 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8662g00002 Vium-Chr8662 13384 14768 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8662g00002 50 167 B3 DNA Binding Superfamily AT5G62000 30.000 2.93e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vium8662g00002 AUX_IAA 7.4e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8662g00002 K14484 - gmx:100783140 281.952