Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8662g00001 ATGTTGATGACCAATTTGTTTTCCCCAAATTCTATTACAGCATTTTTGGCAAGAGACTATTATGATATTCTCGGTGTGAGTAAGAACGCAAGTTCTTCGGAAATAAAGAAAGCTTACTATGGGCTTGCAAAAAGGCTCCATCCAGATACAAACAAAGATGATCCCGAAGCTGAAAAGAAGTTTCAAGAAGTCTCGATAGCATATGAGGTTTTGAAGGATGAGGAAAGGCGACAACAGTATGATCAGCTTGGTCATGATGCTTATGTAAACCAACAAAGCACTGGTTTCGGTGGTGAGGGTGGCTTCAATCCCTTCGAGCAGATATTCCGTGATCATGATTTTGTCAAGAGCTTCTTCCATCAGAATATTGGTGGAGAGGATGTGAAGACTTTTATTGAGCTATCTTTTATGGAAGCTGTACAAGGGTGCACCAAAACTGTAACATTTGAAACAGATATGCTTTGTAATGCTTGTGGTGGGAGTGGTGTTCCTCCTGGTACAAGACCTGAAACTTGTAAGCGATGTAAAGGGTCAGGAGTGTTATTTGTACAAGCTGGCATATTCAGAATGGAGAGTACCTGTGGTACCTGCAAGGGAACTGGAAAAATTGTATCGAATTTCTGCAAGTCTTGCAGGGGTGAGAAGGTTGTCAAAGGATCAAAGTCGGTCAAGTTGGATATTATGCCTGGGATAGACACCAATGAGACCATAAAGGTTTTCGGAGGTGGTGGAGCAGATCCTGATAGAGATCATCATGGTGATCTCTATGTTACTATCAAGGTTAGAGAAGACCCTGTTTTTCGCAGAGAAGGATCTGATATTCACGTAGATGCTGTGTTAAGTATCACTCAGGCGATTTTGGGGGGAACTATTCAAGTCCCGACTCTTACTGGAGAAGTTGTACTTAAGGTTCGTCCAGGCACCCAACCTGGTCAGAAAGTGGTTTTGAAAAAGAAAGGGATCAAGACAAAAAATTCTTACACATTTGGGGATCAATATGTTCATTTTAATGTCAACATCCCAACAAACCTGACACAGAGACAACGAGAGTTGATTGAAGAGTTTGCCAAGGAAGAGCAAGAGGAATTTGATAAACGGAGAAGTGCTTCAGCTTCTGGTTGA 1122 0.4171 MLMTNLFSPNSITAFLARDYYDILGVSKNASSSEIKKAYYGLAKRLHPDTNKDDPEAEKKFQEVSIAYEVLKDEERRQQYDQLGHDAYVNQQSTGFGGEGGFNPFEQIFRDHDFVKSFFHQNIGGEDVKTFIELSFMEAVQGCTKTVTFETDMLCNACGGSGVPPGTRPETCKRCKGSGVLFVQAGIFRMESTCGTCKGTGKIVSNFCKSCRGEKVVKGSKSVKLDIMPGIDTNETIKVFGGGGADPDRDHHGDLYVTIKVREDPVFRREGSDIHVDAVLSITQAILGGTIQVPTLTGEVVLKVRPGTQPGQKVVLKKKGIKTKNSYTFGDQYVHFNVNIPTNLTQRQRELIEEFAKEEQEEFDKRRSASASG 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8662g00001 373 Gene3D DnaJ domain 16 126 IPR036869 -
Vium8662g00001 373 SUPERFAMILY HSP40/DnaJ peptide-binding domain 125 263 IPR008971 GO:0006457|GO:0051082
Vium8662g00001 373 CDD DnaJ_zf 155 215 IPR001305 GO:0031072|GO:0051082
Vium8662g00001 373 ProSitePatterns Nt-dnaJ domain signature. 61 80 IPR018253 -
Vium8662g00001 373 PRINTS DnaJ domain signature 56 76 IPR001623 -
Vium8662g00001 373 PRINTS DnaJ domain signature 39 54 IPR001623 -
Vium8662g00001 373 PRINTS DnaJ domain signature 21 39 IPR001623 -
Vium8662g00001 373 PRINTS DnaJ domain signature 76 95 IPR001623 -
Vium8662g00001 373 SUPERFAMILY HSP40/DnaJ peptide-binding domain 266 352 IPR008971 GO:0006457|GO:0051082
Vium8662g00001 373 CDD DnaJ_C 126 344 - -
Vium8662g00001 373 ProSiteProfiles dnaJ domain profile. 19 84 IPR001623 -
Vium8662g00001 373 ProSiteProfiles Zinc finger CR-type profile. 142 220 IPR001305 GO:0031072|GO:0051082
Vium8662g00001 373 FunFam Molecular chaperone DnaJ 147 220 - -
Vium8662g00001 373 Pfam DnaJ C terminal domain 131 341 IPR002939 -
Vium8662g00001 373 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 142 218 IPR036410 -
Vium8662g00001 373 FunFam Chaperone protein dnaJ 1, mitochondrial 262 368 - -
Vium8662g00001 373 Gene3D - 147 219 - -
Vium8662g00001 373 Hamap Chaperone protein DnaJ [dnaJ]. 16 369 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Vium8662g00001 373 Pfam DnaJ domain 19 81 IPR001623 -
Vium8662g00001 373 Gene3D - 262 370 - -
Vium8662g00001 373 SUPERFAMILY Chaperone J-domain 18 120 IPR036869 -
Vium8662g00001 373 FunFam Chaperone protein dnaJ GFA2, mitochondrial 16 127 - -
Vium8662g00001 373 CDD DnaJ 19 73 IPR001623 -
Vium8662g00001 373 SMART dnaj_3 18 76 IPR001623 -
Vium8662g00001 373 Pfam DnaJ central domain 155 215 IPR001305 GO:0031072|GO:0051082
Vium8662g00001 373 Gene3D - 127 260 - -
Vium8662g00001 373 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 15 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8662g00001 Vium-Chr8662 1289 7904 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8662g00001 18 81 C2H2 Transcription Factor Family AT1G74250 42.029 1.39e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8662g00001 K03686 - gmx:100799735 662.914