Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8661g00007 ATGAGTTTGAGATATGGTAGTGTGAGTTTTGTTGCTTTAGTGCTTTTGCCACTCGTGGCGTCTGCAGCTTCAGTTGTGAAGAACCTTCCTGGTTATGAGGGCAACCTTCCTTTCAAGCTTGAAACTGGATACATCGGAGTGGGAGAGGAGGGAGTAAATATATTTCACTTATTTGTTGAATCTCAAAGAAACCCCTTCATTGATCCAGTGCTACTATGGTTAGTTGGAGGTCCAGGTTGTTCTGCACTATCAGCGTTCTTTTTTGAAAATGGGCCTTTAATAATGAATGGTGATAACGGTGGAAACCTTCCAACACTTGAGTTGAACCCATATGGGTGGTCACAGACATTGAATATGCTATACATAGATATGCCAGTAGGTACAGGATTTTCATACTCAGAAACCCAACAAGGCTATTACAGTAATGACACGTTATGGGTTGACCATACTTATGAATTTCTACAAAAGTGGTTTATTGATCATCCAAAGTTTAACTCAAATCCATTCTACATTGGTGGTGGTTCATATTCAGGATTAACTACAGGACCTCTTGTTCAAAAGGTGTATGAAGGTTATAAAGCAAGACACAAGCCACTCATCAACATCAAAGGGTATGTAATTGCGAGCCCAGCTGTTGACCCATTTCTAGAACAAAACATGAGAGTTGTATATGCATACCAAAGGAGTCTTATATCCGAAGTACTCTACAAGTCTATGAAAGAAAACTGTAACGGTGATTATATAAACATTGATCCACAAAACACAAAGTGTGTCTCAGATTATGAAGCTTATTCTGAGCTAGTTCGTTACATAAATGAACAACAAATCATGGAACCTCTTTGTGCTACCACGCCTGGTTTGAAACGACATATGCTACAAGAACTTCAAGATCCTCCTACATTTTGGTGTAGAAGCTATTATCATATCTTTGTCGACAAATGGGCAAACGATGAAAATGTGAGGAAGGCCCTTCATGTAAGAGAGGGAACTAAAGAGGAATTCCTGAGATGCAACAGGACAATGGCATACGCCCAAACTTTGAAAAGCTCAGTACAATATTATCGGAATCTCACAAACGCCAACCTTGAAGCTCTCGTTTACTGTGGTGATCTTGATATGAGTATTCCACATCTGGGTACACAACATTGGATCAATTCGTTCAACATGACCATACGTGACAAATGGCGTGCATGGTTTGTCGACGGTCAAGTTGCCGGGTACACAGAACTGTATAAAATGAAAGAAGATCACTTCTTTACATATGTAATCGTGAAGGGTGCTGGACACGTGGCTCAAACATTTAAACCCAAGGAAGTTTATAATTTGATCAATAGATGGTTTTCATTTTCTCTTATCTAA 1359 0.3944 MSLRYGSVSFVALVLLPLVASAASVVKNLPGYEGNLPFKLETGYIGVGEEGVNIFHLFVESQRNPFIDPVLLWLVGGPGCSALSAFFFENGPLIMNGDNGGNLPTLELNPYGWSQTLNMLYIDMPVGTGFSYSETQQGYYSNDTLWVDHTYEFLQKWFIDHPKFNSNPFYIGGGSYSGLTTGPLVQKVYEGYKARHKPLINIKGYVIASPAVDPFLEQNMRVVYAYQRSLISEVLYKSMKENCNGDYINIDPQNTKCVSDYEAYSELVRYINEQQIMEPLCATTPGLKRHMLQELQDPPTFWCRSYYHIFVDKWANDENVRKALHVREGTKEEFLRCNRTMAYAQTLKSSVQYYRNLTNANLEALVYCGDLDMSIPHLGTQHWINSFNMTIRDKWRAWFVDGQVAGYTELYKMKEDHFFTYVIVKGAGHVAQTFKPKEVYNLINRWFSFSLI 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8661g00007 452 Gene3D - 303 450 - -
Vium8661g00007 452 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 25 436 IPR001563 GO:0004185|GO:0006508
Vium8661g00007 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 109 121 IPR001563 GO:0004185|GO:0006508
Vium8661g00007 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 419 432 IPR001563 GO:0004185|GO:0006508
Vium8661g00007 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 182 IPR001563 GO:0004185|GO:0006508
Vium8661g00007 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 122 132 IPR001563 GO:0004185|GO:0006508
Vium8661g00007 452 Pfam Serine carboxypeptidase 30 448 IPR001563 GO:0004185|GO:0006508
Vium8661g00007 452 SUPERFAMILY alpha/beta-Hydrolases 26 448 IPR029058 -
Vium8661g00007 452 FunFam Carboxypeptidase 302 450 - -
Vium8661g00007 452 Gene3D alpha/beta hydrolase 20 291 IPR029058 -
Vium8661g00007 452 FunFam Serine carboxypeptidase-like 19 19 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8661g00007 Vium-Chr8661 28448 49782 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8661g00007 20 53 Calmodulin-binding Proteins AT2G22960 58.824 4.17e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8661g00007 K16296 - gmx:100798023 546.584