Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8661g00006 ATGAGGGCAACCTTCCTTTCAAGCTTGAAACTGGGGCCTTTAATAATGAATGGTGATAACGGTGGAAACCTTCCAACACTTGAGTTGAACCCATATGGGTGGTCACAGACATTGAATATGCTATACATAGATATGCCAGTAGGTACAGGATTTTCATACTCAGAAACCCAACAAGGCTATTACAGTAATGACACGTTATGGGTTGACCATACTTATGAATTTCTACAAAAGTGGTTTATTGATCATCCAAAGTTTAACTCAAATCCATTCTACATTGGTGGTGGTTCATATTCAGGATTAACTACAGGACCTCTTGTTCAAAAGGTGTATGAAGGTTATAAAGCAAGACACAAGCCACTCATCAACATCAAAGGGTATGTAATTGCGAGCCCAGCTGTTGACCCATTTCTAGAACAAAACATGAGAGTTGTATATGCATACCAAAGGAGTCTTATATCCGAAGTACTCTACAAGTCTATGAAAGAAAACTGTAACGGTGATTATATAAACATTGATCCACAAAACACAAAGTGTGTCTCAGATTATGAAGCTTATTCTGAGCTAGTTCGTTACATAAATGAACAACAAATCATGGAACCTCTTTGTGCTACCACGCCTGGTTTGAAACGACATATGCTACAAGAACTTCAAGATCCTCCTACATTTTGGTGTAGAAGCTATTATCATATCTTTGTCGACAAATGGGCAAACGATGAAAATGTGAGGAAGGCCCTTCATGTAAGAGAGGGAACTAAAGAGGAATTCCTGAGATGCAACAGGACAATGGCATACGCCCAAACTTTGAAAAGCTCAGTACAATATTATCGGAATCTCACAAACGCCAACCTTGAAGCTCTCGTTTACTGTGGTGATCTTGATATGAGTATTCCACATCTGGGTACACAACATTGGATCAATTCGTTCAACATGACCATACGTGACAAATGGCGTGCATGGTTTGTCGACGGTCAAGTTGCCGGGTACACAGAACTGTATAAAATGAAAGAAGATCACTTCTTTACATATGTAATCGTGAAGGGTGCTGGACACGTGGCTCAAACATTTAAACCCAAGGAAGTTTATAATTTGATCAATAGATGGTTTTCATTTTCTCTTATCTAA 1122 0.3895 MRATFLSSLKLGPLIMNGDNGGNLPTLELNPYGWSQTLNMLYIDMPVGTGFSYSETQQGYYSNDTLWVDHTYEFLQKWFIDHPKFNSNPFYIGGGSYSGLTTGPLVQKVYEGYKARHKPLINIKGYVIASPAVDPFLEQNMRVVYAYQRSLISEVLYKSMKENCNGDYINIDPQNTKCVSDYEAYSELVRYINEQQIMEPLCATTPGLKRHMLQELQDPPTFWCRSYYHIFVDKWANDENVRKALHVREGTKEEFLRCNRTMAYAQTLKSSVQYYRNLTNANLEALVYCGDLDMSIPHLGTQHWINSFNMTIRDKWRAWFVDGQVAGYTELYKMKEDHFFTYVIVKGAGHVAQTFKPKEVYNLINRWFSFSLI 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8661g00006 373 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 357 IPR001563 GO:0004185|GO:0006508
Vium8661g00006 373 Gene3D alpha/beta hydrolase 4 371 IPR029058 -
Vium8661g00006 373 SUPERFAMILY alpha/beta-Hydrolases 9 369 IPR029058 -
Vium8661g00006 373 PRINTS Carboxypeptidase C serine protease (S10) family signature 30 42 IPR001563 GO:0004185|GO:0006508
Vium8661g00006 373 PRINTS Carboxypeptidase C serine protease (S10) family signature 43 53 IPR001563 GO:0004185|GO:0006508
Vium8661g00006 373 PRINTS Carboxypeptidase C serine protease (S10) family signature 78 103 IPR001563 GO:0004185|GO:0006508
Vium8661g00006 373 PRINTS Carboxypeptidase C serine protease (S10) family signature 340 353 IPR001563 GO:0004185|GO:0006508
Vium8661g00006 373 FunFam Carboxypeptidase 223 371 - -
Vium8661g00006 373 Pfam Serine carboxypeptidase 11 369 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8661g00006 Vium-Chr8661 28447 49783 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8661g00006 213 369 Calmodulin-binding Proteins AT2G22960 38.854 4.50e-34 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8661g00006 K16296 - gmx:100798023 546.584