Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8661g00005 ATGAGGGCAACCTTCCTTTCAAGCTTGAAACTGGTGCTACTATGGTTAGTTGGAGGTCCAGGTTGTTCTGCACTATCAGCGTTCTTTTTTGAAAATGGGCCTTTAATAATGAATGGTGATAACGGTGGAAACCTTCCAACACTTGAGTTGAACCCATATGGGTGGTCACAGACATTGAATATGCTATACATAGATATGCCAGTAGGTACAGGATTTTCATACTCAGAAACCCAACAAGGCTATTACAGTAATGACACGTTATGGGTTGACCATACTTATGAATTTCTACAAAAGTGGTTTATTGATCATCCAAAGTTTAACTCAAATCCATTCTACATTGGTGGTGGTTCATATTCAGGATTAACTACAGGACCTCTTGTTCAAAAGGTGTATGAAGGTTATAAAGCAAGACACAAGCCACTCATCAACATCAAAGGGTATGTAATTGCGAGCCCAGCTGTTGACCCATTTCTAGAACAAAACATGAGAGTTGTATATGCATACCAAAGGAGTCTTATATCCGAAGTACTCTACAAGTCTATGAAAGAAAACTGTAACGGTGATTATATAAACATTGATCCACAAAACACAAAGTGTGTCTCAGATTATGAAGCTTATTCTGAGCTAGTTCGTTACATAAATGAACAACAAATCATGGAACCTCTTTGTGCTACCACGCCTGGTTTGAAACGACATATGCTACAAGAACTTCAAGATCCTCCTACATTTTGGTGTAGAAGCTATTATCATATCTTTGTCGACAAATGGGCAAACGATGAAAATGTGAGGAAGGCCCTTCATGTAAGAGAGGGAACTAAAGAGGAATTCCTGAGATGCAACAGGACAATGGCATACGCCCAAACTTTGAAAAGCTCAGTACAATATTATCGGAATCTCACAAACGCCAACCTTGAAGCTCTCGTTTACTGTGGTGATCTTGATATGAGTATTCCACATCTGGGTACACAACATTGGATCAATTCGTTCAACATGACCATACGTGACAAATGGCGTGCATGGTTTGTCGACGGTCAAGTTGCCGGGTACACAGAACTGTATAAAATGAAAGAAGATCACTTCTTTACATATGTAATCGTGAAGGGTGCTGGACACGTGGCTCAAACATTTAAACCCAAGGAAGTTTATAATTTGATCAATAGATGGTTTTCATTTTCTCTTATCTAA 1185 0.3907 MRATFLSSLKLVLLWLVGGPGCSALSAFFFENGPLIMNGDNGGNLPTLELNPYGWSQTLNMLYIDMPVGTGFSYSETQQGYYSNDTLWVDHTYEFLQKWFIDHPKFNSNPFYIGGGSYSGLTTGPLVQKVYEGYKARHKPLINIKGYVIASPAVDPFLEQNMRVVYAYQRSLISEVLYKSMKENCNGDYINIDPQNTKCVSDYEAYSELVRYINEQQIMEPLCATTPGLKRHMLQELQDPPTFWCRSYYHIFVDKWANDENVRKALHVREGTKEEFLRCNRTMAYAQTLKSSVQYYRNLTNANLEALVYCGDLDMSIPHLGTQHWINSFNMTIRDKWRAWFVDGQVAGYTELYKMKEDHFFTYVIVKGAGHVAQTFKPKEVYNLINRWFSFSLI 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8661g00005 394 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 6 378 IPR001563 GO:0004185|GO:0006508
Vium8661g00005 394 SUPERFAMILY alpha/beta-Hydrolases 12 390 IPR029058 -
Vium8661g00005 394 Gene3D alpha/beta hydrolase 7 392 IPR029058 -
Vium8661g00005 394 PRINTS Carboxypeptidase C serine protease (S10) family signature 51 63 IPR001563 GO:0004185|GO:0006508
Vium8661g00005 394 PRINTS Carboxypeptidase C serine protease (S10) family signature 64 74 IPR001563 GO:0004185|GO:0006508
Vium8661g00005 394 PRINTS Carboxypeptidase C serine protease (S10) family signature 361 374 IPR001563 GO:0004185|GO:0006508
Vium8661g00005 394 PRINTS Carboxypeptidase C serine protease (S10) family signature 99 124 IPR001563 GO:0004185|GO:0006508
Vium8661g00005 394 FunFam Carboxypeptidase 244 392 - -
Vium8661g00005 394 Pfam Serine carboxypeptidase 12 390 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8661g00005 Vium-Chr8661 28446 49784 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8661g00005 234 390 Calmodulin-binding Proteins AT2G22960 38.854 6.69e-34 122