Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8661g00003 ATGGGGATTCAGACAATGGGATCTCAAGGTATTGGGCAACAGTCTCATTTACAGTCTTCATCTTTGTCTAGGCAAGGTTCATGGTATAATCTTACTCTTGATGAGGTTAATAGTCAATTAGGAGACTTAGGGAAGCCATTGGGTAGCATGAACCTTGACGAGCTTCTTCAAAATGTGTGGACTGCCGAAGCAAGTAAGTCTTCGGTGATAGGTGCGGATAGTGAGAACATTTCGTCCTCTTCCTCGCTTCAGCGGCAGGCCAGCCTGACGCTGGCTCGTGCGTTGAGTGGGAAGACTGTGGATGACGTGTGGAGGGAAATTCAGCAAGGGCAGAAGAAAAGGTATGGAGGGGAAGTGAAAACTCAGGAGGGAGAAATGACTTTTGGTGAGACAACCTTGGAAGATTTCTTGGTGCAAGCAGGGCTTTTTGCTGAAGCTTCTATCAGTCCAGCTGTGGGGTTGGATACAATGGATTTCTCAGCAGCTCAAGGTTTCCAGCAGAAAACGGGCTTGTCTTCATCCCCTTCTATTGGCAGTTTATCGGACACGAGACCGGGCAGGAAAAGGGATGCTCCTGATGCATATGAGAAAACCCTGGAGAGGAGGTTGAGGAGGAAGATCAAGAATAGGGAATCTGCTGCTAGGTCACGAGCTCGTAAACAGGCTTACCATAATGAACTGGTTGGCAAGGTTTCCCGTCTAGAAGAAGAAAATGTAAAGCTAAAGAAAGAGAAGATACATTACAAGGTAAAGGTATACCTTATAGCACTCAACCCTTAG 780 0.4667 MGIQTMGSQGIGQQSHLQSSSLSRQGSWYNLTLDEVNSQLGDLGKPLGSMNLDELLQNVWTAEASKSSVIGADSENISSSSSLQRQASLTLARALSGKTVDDVWREIQQGQKKRYGGEVKTQEGEMTFGETTLEDFLVQAGLFAEASISPAVGLDTMDFSAAQGFQQKTGLSSSPSIGSLSDTRPGRKRDAPDAYEKTLERRLRRKIKNRESAARSRARKQAYHNELVGKVSRLEEENVKLKKEKIHYKVKVYLIALNP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8661g00003 259 SMART brlzneu 197 255 IPR004827 GO:0003700|GO:0006355
Vium8661g00003 259 Pfam bZIP transcription factor 201 249 IPR004827 GO:0003700|GO:0006355
Vium8661g00003 259 Gene3D - 199 252 - -
Vium8661g00003 259 MobiDBLite consensus disorder prediction 166 196 - -
Vium8661g00003 259 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 22 245 IPR043452 GO:0003700|GO:0045893
Vium8661g00003 259 MobiDBLite consensus disorder prediction 166 181 - -
Vium8661g00003 259 CDD bZIP_plant_BZIP46 201 246 - -
Vium8661g00003 259 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 199 251 - -
Vium8661g00003 259 SUPERFAMILY Leucine zipper domain 201 248 IPR046347 GO:0003700|GO:0006355
Vium8661g00003 259 Coils Coil 224 251 - -
Vium8661g00003 259 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 204 219 IPR004827 GO:0003700|GO:0006355
Vium8661g00003 259 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 199 244 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8661g00003 Vium-Chr8661 21681 24397 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8661g00003 6 259 bZIP Transcription Factor Family AT3G56850 43.103 8.64e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium8661g00003 bZIP_1 1.1e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8661g00003 K14432 - gmx:100798549 405.986